# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "EventPointer" in publications use:'
type: software
license: Artistic-2.0
title: 'EventPointer: An effective identification of alternative splicing events using
  junction arrays and RNA-Seq data'
version: 3.20.0
doi: 10.1093/nargab/lqac067
identifiers:
- type: doi
  value: 10.32614/CRAN.package.EventPointer
abstract: 'EventPointer is an R package to identify alternative splicing events that
  involve either simple (case-control experiment) or complex experimental designs
  such as time course experiments and studies including paired-samples. The algorithm
  can be used to analyze data from either junction arrays (Affymetrix Arrays) or sequencing
  data (RNA-Seq). In the latter, EventPointer can work with annotated splicing events
  or can build a splicing graph from the RNA-Seq reads and then identify new and specific
  alternative splicing events. The software returns a data.frame with the detected
  alternative splicing events: gene name, type of event (cassette, alternative 3'',...,etc),
  genomic position, statistical significance and increment of the percent spliced
  in (Delta PSI) for all the events. The algorithm can generate a series of files
  to visualize the detected alternative splicing events in IGV. This eases the interpretation
  of results and the design of primers for standard PCR validation.'
authors:
- family-names: Romero
  given-names: Juan Pablo
  email: jpromero@ceit.es
- family-names: Ferrer-Bonsoms
  given-names: Juan A.
  email: jafhernandez@tecnun.es
- family-names: Sacristan
  given-names: Pablo
  email: a904719@alumni.unav.es
- family-names: Muniategui
  given-names: Ander
- family-names: Carazo
  given-names: Fernando
- family-names: Aramburu
  given-names: Ander
- family-names: Rubio
  given-names: Angel
  email: arubio@tecnun.es
preferred-citation:
  type: article
  title: 'EventPointer 3.0: flexible and accurate splicing analysis that includes
    studying the differential usage of protein-domains'
  authors:
  - family-names: Ferrer-Bonsoms
    given-names: Juan A.
    email: jafhernandez@tecnun.es
  - family-names: Gimeno
    given-names: Marian
  - family-names: Olaverri
    given-names: Danel
  - family-names: Sacristan
    given-names: Pablo
    email: a904719@alumni.unav.es
  - family-names: Lobato
    given-names: César
  - family-names: Castilla
    given-names: Carlos
  - family-names: Carazo
    given-names: Fernando
  - family-names: Rubio
    given-names: Angel
    email: arubio@tecnun.es
  year: '2022'
  journal: NAR Genomics & Bioinformatics
  volume: '4'
  issue: '3'
  doi: 10.1093/nargab/lqac067
  start: lqac067
repository: https://bioc-release.r-universe.dev
repository-code: https://github.com/jpromeror/EventPointer
commit: 772aec7e91628d3c41f6d03155c6458bb6a9721b
url: https://github.com/jpromeror/EventPointer
date-released: '2026-04-28'
contact:
- family-names: Ferrer-Bonsoms
  given-names: Juan A.
  email: jafhernandez@tecnun.es
references:
- type: article
  title: 'EventPointer: an effective identification of alternative splicing events
    using junction arrays'
  authors:
  - family-names: Romero
    given-names: Juan P.
  - family-names: Muniategui
    given-names: Ander
  - family-names: De Miguel
    given-names: Fernando J.
  - family-names: Aramburu
    given-names: Ander
  - family-names: Montuenga
    given-names: Luis
  - family-names: Pio
    given-names: Ruben
  - family-names: Rubio
    given-names: Angel
  year: '2016'
  journal: BMC Genomics
  volume: '17'
  issue: '1'
  doi: 10.1186/s12864-016-2816-x
  start: '467'
- type: article
  title: Comparison of RNA-seq and microarray platforms for splice event detection
    using a cross-platform algorithm
  authors:
  - family-names: Romero
    given-names: Juan P.
  - family-names: Ortiz-Estevez
    given-names: Maria
  - family-names: Muniategui
    given-names: Ander
  - family-names: Carrancio
    given-names: Soraya
  - family-names: Miguel
    given-names: Fernando J
    name-particle: de
  - family-names: Carazo
    given-names: Fernando
  - family-names: Montuenga
    given-names: Luis M
  - family-names: Loos
    given-names: Remco
  - family-names: Pio
    given-names: Ruben
  - family-names: Trotter
    given-names: Matthew WB
  - family-names: Rubio
    given-names: Angel
  year: '2018'
  journal: BMC Genomics
  volume: '19'
  issue: '1'
  doi: 10.1186/s12864-018-5082-2
  start: '703'