Package: ExiMiR 2.54.0

Sylvain Gubian

ExiMiR: R functions for the normalization of Exiqon miRNA array data

This package contains functions for reading raw data in ImaGene TXT format obtained from Exiqon miRCURY LNA arrays, annotating them with appropriate GAL files, and normalizing them using a spike-in probe-based method. Other platforms and data formats are also supported.

Authors:Sylvain Gubian <[email protected]>, Alain Sewer <[email protected]>, PMP SA

ExiMiR_2.54.0.tar.gz
ExiMiR_2.54.0.zip(r-4.7)ExiMiR_2.54.0.zip(r-4.6)ExiMiR_2.54.0.zip(r-4.5)
ExiMiR_2.54.0.tgz(r-4.6-any)ExiMiR_2.54.0.tgz(r-4.5-any)
ExiMiR_2.54.0.tar.gz(r-4.7-any)ExiMiR_2.54.0.tar.gz(r-4.6-any)
ExiMiR_2.54.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
ExiMiR/json (API)
NEWS

# Install 'ExiMiR' in R:
install.packages('ExiMiR', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:
  • galenv - R annotation environment for GEO series GSE20122
  • GSE19183 - Affybatch object for the raw data from GEO series GSE19183
  • GSE20122 - Affybatch object for the raw data from GEO series GSE20122

On BioConductor:ExiMiR-2.55.0(bioc 3.24)ExiMiR-2.54.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

microarrayonechanneltwochannelpreprocessinggeneexpressiontranscription

3.78 score 5 scripts 465 downloads 3 mentions 12 exports 9 dependencies

Last updated from:e275382de8 (on RELEASE_3_23). Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksERROR148
linux-devel-x86_64NOTE197
source / vignettesOK264
linux-release-x86_64NOTE205
macos-release-arm64NOTE113
macos-oldrel-arm64NOTE126
windows-develNOTE503
windows-releaseNOTE495
windows-oldrelNOTE485
wasm-releaseOK111

Exports:bg.correct.miRcreateABmake.gal.envnorm.miRNormiRNormiR.bgcorrect.methodsNormiR.normalize.methodsNormiR.pmcorrect.methodsNormiR.spikein.argsNormiR.summary.methodsReadExisummarize.miR

Dependencies:affyaffyioBiobaseBiocGenericsBiocManagergenericslimmapreprocessCorestatmod

Description of ExiMiR

Rendered fromExiMiR-vignette.Rnwusingutils::Sweaveon May 29 2026.

Last update: 2020-04-13
Started: 2013-11-01