Package: ExperimentHub 3.2.1

Bioconductor Package Maintainer

ExperimentHub: Client to access ExperimentHub resources

This package provides a client for the Bioconductor ExperimentHub web resource. ExperimentHub provides a central location where curated data from experiments, publications or training courses can be accessed. Each resource has associated metadata, tags and date of modification. The client creates and manages a local cache of files retrieved enabling quick and reproducible access.

Authors:Bioconductor Package Maintainer [cre], Martin Morgan [aut], Marc Carlson [ctb], Dan Tenenbaum [ctb], Sonali Arora [ctb], Valerie Oberchain [ctb], Kayla Morrell [ctb], Lori Shepherd [aut]

ExperimentHub_3.2.1.tar.gz
ExperimentHub_3.2.1.zip(r-4.7)ExperimentHub_3.2.1.zip(r-4.6)ExperimentHub_3.2.1.zip(r-4.5)
ExperimentHub_3.2.1.tgz(r-4.6-any)ExperimentHub_3.2.1.tgz(r-4.5-any)
ExperimentHub_3.2.1.tar.gz(r-4.7-any)ExperimentHub_3.2.1.tar.gz(r-4.6-any)
ExperimentHub_3.2.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
ExperimentHub/json (API)
NEWS

# Install 'ExperimentHub' in R:
install.packages('ExperimentHub', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/bioconductor/experimenthub/issues

On BioConductor:ExperimentHub-3.3.0(bioc 3.24)ExperimentHub-3.2.0(bioc 3.23)

infrastructuredataimportguithirdpartyclientcore-packageu24ca289073

11.51 score 11 stars 66 packages 1.5k scripts 13k downloads 11 mentions 8 exports 56 dependencies

Last updated from:144c59f810 (on RELEASE_3_23). Checks:2 ERROR, 7 WARNING, 1 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksERROR179
linux-devel-x86_64WARNING247
source / vignettesERROR256
linux-release-x86_64WARNING279
macos-release-arm64WARNING140
macos-oldrel-arm64WARNING188
windows-develWARNING163
windows-releaseWARNING154
windows-oldrelWARNING169
wasm-releaseOK169

Exports:cachecreateHubAccessorsExperimentHubgetExperimentHubOptionlistResourcesloadResourcespackagesetExperimentHubOption

Dependencies:AnnotationDbiAnnotationHubaskpassBiobaseBiocBaseUtilsBiocFileCacheBiocGenericsBiocManagerBiocVersionBiostringsbitbit64blobcachemclicpp11crayoncurlDBIdbplyrdplyrfastmapfilelockgenericsgluehttrhttr2IRangesjsonliteKEGGRESTlifecyclemagrittrmemoisemimeopensslpillarpkgconfigpngpurrrR6rappdirsrlangRSQLiteS4VectorsSeqinfostringistringrsystibbletidyrtidyselectutf8vctrswithrXVectoryaml

Readme and manuals

Help Manual

Help pageTopics
ExperimentHub objects and their related methods and functionscache,ExperimentHub-method class:ExperimentHub createHubAccessors ExperimentHub ExperimentHub-class listResources,ExperimentHub-method loadResources,ExperimentHub-method package,ExperimentHub-method recordStatus refreshHub [[,ExperimentHub,character,missing-method [[,ExperimentHub,numeric,missing-method
Get and set options for default ExperimentHub behavior.getExperimentHubOption setExperimentHubOption
Utility functions for discovering package-specific Hub resources.listResources listResources,AnnotationHub-method loadResources loadResources,AnnotationHub-method utilities