Package: ExploreModelMatrix
Type: Package
Title: Graphical Exploration of Design Matrices
Version: 1.24.0
Date: 2026-03-16
Authors@R: c(person("Charlotte", "Soneson", role = c("aut", "cre"), 
    email = "charlottesoneson@gmail.com", 
    comment = c(ORCID = "0000-0003-3833-2169")),
    person("Federico", "Marini", role = "aut", 
    email = "marinif@uni-mainz.de",
    comment = c(ORCID = "0000-0003-3252-7758")),
    person("Michael", "Love", role = "aut", 
    email = "michaelisaiahlove@gmail.com",
    comment = c(ORCID = "0000-0001-8401-0545")),
    person("Florian", "Geier", role = "aut",
    email = "florian.geier@unibas.ch",
    comment = c(ORCID = "0000-0002-9076-9264")),
    person("Michael", "Stadler", role = "aut",
    email = "michael.stadler@fmi.ch",
    comment = c(ORCID = "0000-0002-2269-4934")))
Description: Given a sample data table and a design formula,
        ExploreModelMatrix generates an interactive application for
        exploration of the resulting design matrix. This can be helpful
        for interpreting model coefficients and constructing
        appropriate contrasts in (generalized) linear models. Static
        visualizations can also be generated.
License: MIT + file LICENSE
Encoding: UTF-8
Imports: shiny (>= 1.5.0), shinydashboard, DT, cowplot, utils, dplyr,
        magrittr, tidyr, ggplot2, stats, methods, rintrojs, scales,
        tibble, MASS, limma, S4Vectors, shinyjs, rlang
RoxygenNote: 7.3.3
Suggests: testthat (>= 2.1.0), knitr, rmarkdown, htmltools, BiocStyle
VignetteBuilder: knitr
URL: https://github.com/csoneson/ExploreModelMatrix
BugReports: https://github.com/csoneson/ExploreModelMatrix/issues
biocViews: ExperimentalDesign, Regression, DifferentialExpression,
        ShinyApps
Config/pak/sysreqs: cmake make libicu-dev libuv1-dev zlib1g-dev
Repository: Bioconductor 3.23
Date/Publication: 2026-04-28 12:52:19 UTC
RemoteUrl: https://github.com/bioc/ExploreModelMatrix
RemoteRef: RELEASE_3_23
RemoteSha: fe30945452eb92e8a5bd8f144036b331f4e7f199
NeedsCompilation: no
Packaged: 2026-10-19 08:15:36 UTC; root
Author: Charlotte Soneson [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-3833-2169>),
  Federico Marini [aut] (ORCID: <https://orcid.org/0000-0003-3252-7758>),
  Michael Love [aut] (ORCID: <https://orcid.org/0000-0001-8401-0545>),
  Florian Geier [aut] (ORCID: <https://orcid.org/0000-0002-9076-9264>),
  Michael Stadler [aut] (ORCID: <https://orcid.org/0000-0002-2269-4934>)
Maintainer: Charlotte Soneson <charlottesoneson@gmail.com>