Introduction | Getting started | Session Info
Package: FANTOM3and4CAGE 1.48.0
Vanja Haberle
FANTOM3and4CAGE: CAGE data from FANTOM3 and FANTOM4 projects
CAGE (Cap Analysis Gene Expression) data from FANTOM3 and FANTOM4 projects produced by RIKEN Omics Science Center.
Authors:
FANTOM3and4CAGE_1.48.0.tar.gz
FANTOM3and4CAGE_1.48.0.tar.gz(r-4.7-any)FANTOM3and4CAGE_1.48.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
FANTOM3and4CAGE/json (API)
| # Install 'FANTOM3and4CAGE' in R: |
| install.packages('FANTOM3and4CAGE', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
- FANTOMhumanSamples - List of FANTOM CAGE samples for human
- FANTOMmouseSamples - List of FANTOM CAGE samples for mouse
- FANTOMtimecourseCAGEhuman - Human timecourse CAGE data produced in FANTOM4 project
- FANTOMtimecourseCAGEmouse - Mouse timecourse CAGE data produced in FANTOM projects
- FANTOMtissueCAGEhuman - CAGE data produced in FANTOM projects for various human tissues and cell lines
- FANTOMtissueCAGEmouse - CAGE data produced in FANTOM projects for various mouse tissues and cell lines
On BioConductor:FANTOM3and4CAGE-1.49.0(data/experiment 3.24)FANTOM3and4CAGE-1.48.0(data/experiment 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:c29eab6b16 (on RELEASE_3_23). Checks:1 ERROR, 3 OK. Indexed: no.
This is a data package. Data packages may be large and do not get checked across all platforms.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 105 | ||
| linux-devel | OK | 218 | ||
| source / vignettes | OK | 427 | ||
| linux-release | OK | 157 |
Exports:
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| List of FANTOM CAGE samples for human | FANTOMhumanSamples |
| List of FANTOM CAGE samples for mouse | FANTOMmouseSamples |
| Human timecourse CAGE data produced in FANTOM4 project | FANTOMtimecourseCAGEhuman |
| Mouse timecourse CAGE data produced in FANTOM projects | FANTOMtimecourseCAGEmouse |
| CAGE data produced in FANTOM projects for various human tissues and cell lines | FANTOMtissueCAGEhuman |
| CAGE data produced in FANTOM projects for various mouse tissues and cell lines | FANTOMtissueCAGEmouse |