Package: FlowSorted.Blood.450k 1.50.0
Andrew E Jaffe
FlowSorted.Blood.450k: Illumina HumanMethylation data on sorted blood cell populations
Raw data objects for the Illumina 450k DNA methylation microarrays, and an object depicting which CpGs on the array are associated with cell type.
Authors:
FlowSorted.Blood.450k_1.50.0.tar.gz
FlowSorted.Blood.450k_1.50.0.tar.gz(r-4.7-any)FlowSorted.Blood.450k_1.50.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
FlowSorted.Blood.450k/json (API)
| # Install 'FlowSorted.Blood.450k' in R: |
| install.packages('FlowSorted.Blood.450k', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
- FlowSorted.Blood.450k.compTable - Cell Composition Association Table
- FlowSorted.Blood.450k.JaffeModelPars - Model Parameters for Blood Cell Type Estimation
On BioConductor:FlowSorted.Blood.450k-1.51.2(data/experiment 3.24)FlowSorted.Blood.450k-1.50.0(data/experiment 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
experimentdatahomo_sapiens_datatissuemicroarraydatatissuemicroarraydatamethylationarraydatadatapkg
Last updated from:3d4fd9cb5b (on RELEASE_3_23). Checks:1 ERROR, 2 WARNING, 1 OK. Indexed: no.
This is a data package. Data packages may be large and do not get checked across all platforms.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 180 | ||
| linux-devel | WARNING | 388 | ||
| source / vignettes | OK | 310 | ||
| linux-release | WARNING | 315 |
Exports:
Dependencies:abindannotateAnnotationDbiaskpassbase64beanplotBHBiobaseBiocGenericsBiocIObiocmakeBiocParallelBiostringsbitbit64bitopsblobbumphuntercachemcigarilloclicliprcodetoolscpp11crayoncurldata.tableDBIDelayedArrayDelayedMatrixStatsdigestdir.expirydoRNGdplyrfastmapfilelockforeachformatRfutile.loggerfutile.optionsgenefiltergenericsGenomicAlignmentsGenomicFeaturesGenomicRangesGEOqueryglueh5mreadHDF5Arrayhmshttrhttr2illuminaioIRangesiteratorsjsonliteKEGGRESTlambda.rlatticelifecyclelimmalocfitmagrittrMASSMatrixMatrixGenericsmatrixStatsmclustmemoisemimeminfimulttestnlmenor1mixopensslpillarpkgconfigplyrpngpreprocessCoreprettyunitsprogresspurrrquadprogR.methodsS3R.ooR.utilsR6RColorBrewerRcppRCurlreadrrentrezreshaperestfulrrhdf5rhdf5filtersRhdf5libRhtslibrjsonrlangrngtoolsRsamtoolsRSQLitertracklayerrvestS4ArraysS4VectorsscrimeselectrSeqinfosiggenessnowSparseArraysparseMatrixStatsstatmodstringistringrSummarizedExperimentsurvivalsystibbletidyrtidyselecttzdbutf8vctrsvroomwithrXMLxml2xtableXVectoryaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Illumina Human Methylation data from 450k on sorted blood cell populations | FlowSorted.Blood.450k |
| Cell Composition Association Table | FlowSorted.Blood.450k.compTable |
| Model Parameters for Blood Cell Type Estimation | FlowSorted.Blood.450k.JaffeModelPars |