Package: FlowSorted.Blood.EPIC
Type: Package
Title: Illumina EPIC data on immunomagnetic sorted peripheral adult
        blood cells
Version: 2.16.0
Date: 2021-10-26
Authors@R: c( person(c("Lucas", "A."), "Salas", role = c("cre", "aut"),
            email = "lucas.a.salas.diaz@dartmouth.edu"),
            person(c("Devin", "C."), "Koestler", role = c("aut"),
            email = "dkoestler@kumc.edu"),
            person(c("Rondi", "A."), "Butler", role = c("ctb")),
            person(c("Helen", "M."), "Hansen", role = c("ctb")),
            person(c("John", "K."), "Wiencke", role = c("ctb")),
            person(c("Karl", "T."), "Kelsey", role = c("ctb")),
            person(c("Brock", "C."), "Christensen", role = c("ctb")),
            person(c("Kasper", "Daniel"), "Hansen", role = c("ctb"),
            comment = "author and maintainer of the original minfi estimateCellCounts and internal functions"),
            person("Jean-Philippe", "Fortin", role = "ctb", 
            comment = "contributor in the original minfi estimateCellCounts and internal functions"),
            person(c("Shan", "V."), "Andrews", role = "ctb",
            comment = "contributor in the original minfi estimateCellCounts and internal functions"),
            person(c("E.", "Andres"), "Houseman", role = c("ctb"),
            comment = "author of the original quadratic programming function used for cell projection"),
            person(c("Andrew", "E"), "Jaffe", role = c("ctb"),
            comment = "author of the original estimateCellCounts and internal functions within minfi"))
Description: Raw data objects to be used for blood cell proportion
        estimation in minfi and similar packages. The
        FlowSorted.Blood.EPIC object is based in samples assayed by
        Brock Christensen and colleagues; for details see Salas et al.
        2018.
        https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE110554.
License: GPL-3
Depends: R (>= 3.5), minfi(>= 1.21.2), ExperimentHub
Imports: genefilter, nlme, quadprog, graphics, stats, utils,
        AnnotationHub, SummarizedExperiment, S4Vectors
Enhances: FlowSorted.CordBloodCombined.450k(>= 1.11.5)
biocViews: ExperimentData, Homo_sapiens_Data, Tissue, MicroarrayData,
        Genome, TissueMicroarrayData, MethylationArrayData
NeedsCompilation: no
LazyData: yes
LazyDataCompression: gzip
Suggests: knitr,rmarkdown, FlowSorted.CordBlood.450k,
        FlowSorted.Blood.450k(>= 1.0.1),
        EpiDISH,FlowSorted.CordBloodNorway.450k, testthat,
        IlluminaHumanMethylation450kmanifest(>= 0.2.0),
        IlluminaHumanMethylationEPICmanifest,
        IlluminaHumanMethylation450kanno.ilmn12.hg19(>= 0.2.1),
        IlluminaHumanMethylationEPICanno.ilm10b4.hg19
VignetteBuilder: knitr
Encoding: UTF-8
RoxygenNote: 7.2.3
URL: https://github.com/immunomethylomics/FlowSorted.Blood.EPIC
BugReports: https://github.com/immunomethylomics/FlowSorted.Blood.EPIC/issues.
Config/pak/sysreqs: make libbz2-dev libicu-dev liblzma-dev libpng-dev
        libxml2-dev libssl-dev libx11-dev xz-utils zlib1g-dev
Repository: Bioconductor 3.23
Date/Publication: 2026-04-28 12:31:31 UTC
RemoteUrl: https://github.com/bioc/FlowSorted.Blood.EPIC
RemoteRef: RELEASE_3_23
RemoteSha: a88844dcb342fb6cc29cb083f5438788d0903ba3
Packaged: 2026-10-10 11:19:34 UTC; root
Author: Lucas A. Salas [cre, aut],
  Devin C. Koestler [aut],
  Rondi A. Butler [ctb],
  Helen M. Hansen [ctb],
  John K. Wiencke [ctb],
  Karl T. Kelsey [ctb],
  Brock C. Christensen [ctb],
  Kasper Daniel Hansen [ctb] (author and maintainer of the original minfi
    estimateCellCounts and internal functions),
  Jean-Philippe Fortin [ctb] (contributor in the original minfi
    estimateCellCounts and internal functions),
  Shan V. Andrews [ctb] (contributor in the original minfi
    estimateCellCounts and internal functions),
  E. Andres Houseman [ctb] (author of the original quadratic programming
    function used for cell projection),
  Andrew E Jaffe [ctb] (author of the original estimateCellCounts and
    internal functions within minfi)
Maintainer: Lucas A. Salas <lucas.a.salas.diaz@dartmouth.edu>