Package: GA4GHclient 1.36.0
Welliton Souza
GA4GHclient: A Bioconductor package for accessing GA4GH API data servers
GA4GHclient provides an easy way to access public data servers through Global Alliance for Genomics and Health (GA4GH) genomics API. It provides low-level access to GA4GH API and translates response data into Bioconductor-based class objects.
Authors:
GA4GHclient_1.36.0.tar.gz
GA4GHclient_1.36.0.zip(r-4.7)GA4GHclient_1.36.0.zip(r-4.6)GA4GHclient_1.36.0.zip(r-4.5)
GA4GHclient_1.36.0.tgz(r-4.6-any)GA4GHclient_1.36.0.tgz(r-4.5-any)
GA4GHclient_1.36.0.tar.gz(r-4.7-any)GA4GHclient_1.36.0.tar.gz(r-4.6-any)
GA4GHclient_1.36.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
GA4GHclient/json (API)
NEWS
| # Install 'GA4GHclient' in R: |
| install.packages('GA4GHclient', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/labbcb/ga4ghclient/issues
On BioConductor:GA4GHclient-1.37.0(bioc 3.24)GA4GHclient-1.36.0(bioc 3.23)
datarepresentationthirdpartyclient
Last updated from:98ed334ccc (on RELEASE_3_23). Checks:1 NOTE, 7 ERROR, 2 OK. Indexed: no.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | NOTE | 250 | ||
| linux-devel-x86_64 | ERROR | 438 | ||
| source / vignettes | OK | 400 | ||
| linux-release-x86_64 | ERROR | 443 | ||
| macos-release-arm64 | ERROR | 220 | ||
| macos-oldrel-arm64 | ERROR | 339 | ||
| windows-devel | ERROR | 370 | ||
| windows-release | ERROR | 342 | ||
| windows-oldrel | ERROR | 314 | ||
| wasm-release | OK | 204 |
Exports:getBiosamplegetCallSetgetDatasetgetExpressionLevelgetFeaturegetFeatureSetgetIndividualgetReadGroupSetgetReferencegetReferenceSetgetRnaQuantificationgetRnaQuantificationSetgetVariantgetVariantAnnotationSetgetVariantSetHGVSnameslistReferenceBasesmakeVCFFromGA4GHResponsemakeVCFHeaderFromGA4GHResponsesearchBiosamplessearchCallSetssearchDatasetssearchExpressionLevelssearchFeaturessearchFeatureSetssearchIndividualssearchPhenotypeAssociationssearchPhenotypeAssociationSetssearchReadGroupSetssearchReadssearchReferencessearchReferenceSetssearchRnaQuantificationssearchRnaQuantificationSetssearchVariantAnnotationssearchVariantAnnotationSetssearchVariantssearchVariantsByGRangessearchVariantSets
Dependencies:abindAnnotationDbiaskpassBHBiobaseBiocGenericsBiocIOBiocParallelBiostringsbitbit64bitopsblobBSgenomecachemcigarilloclicodetoolscpp11crayoncurlDBIDelayedArraydplyrfastmapformatRfutile.loggerfutile.optionsgenericsGenomicAlignmentsGenomicFeaturesGenomicRangesgluehttrIRangesjsonliteKEGGRESTlambda.rlatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatsmemoisemimeopensslpillarpkgconfigpngR6RCurlrestfulrRhtslibrjsonrlangRsamtoolsRSQLitertracklayerS4ArraysS4VectorsSeqinfosnowSparseArraySummarizedExperimentsystibbletidyselectutf8VariantAnnotationvctrswithrXMLXVectoryaml
