Package: GEOexplorer
Title: GEOexplorer: a webserver for gene expression analysis and
        visualisation
Date: 2023/10/31
Version: 1.18.0
Authors@R: 
  c(person(given = "Guy",
           family = "Hunt",
           role = c("aut", "cre"),
           email = "guy.hunt@kcl.ac.uk",
           comment = c(ORCID = "0000-0002-5217-2678")),
    person(given = "Rafael",
           family = "Henkin",
           role = c("ctb", "ths"),
           email = "r.henkin@qmul.ac.uk",
           comment = c(ORCID = "0000-0002-5511-5230")),
    person(given = "Alfredo",
           family = "Iacoangeli",
           role = c("ctb", "ths"),
           email = "alfredo.iacoangeli@kcl.ac.uk",
           comment = c(ORCID = "0000-0002-5280-5017")),
    person(given = "Fabrizio",
           family = "Smeraldi",
           role = c("ctb", "ths"),
           email = "f.smeraldi@qmul.ac.uk",
           comment = c(ORCID = "0000-0002-0057-8940")),
    person(given = "Michael",
           family = "Barnes",
           role = c("ctb", "ths"),
           email = "m.r.barnes@qmul.ac.uk",
           comment = c(ORCID = "0000-0001-9097-7381")))
Description: GEOexplorer is a webserver and R/Bioconductor package and
        web application that enables users to perform gene expression
        analysis. The development of GEOexplorer was made possible
        because of the excellent code provided by GEO2R (https:
        //www.ncbi.nlm.nih.gov/geo/geo2r/).
License: GPL-3
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
URL: https://github.com/guypwhunt/GEOexplorer/
BugReports: https://github.com/guypwhunt/GEOexplorer/issues
RoxygenNote: 7.2.3
biocViews: Software, GeneExpression, mRNAMicroarray,
        DifferentialExpression, Microarray, MicroRNAArray,
        Transcriptomics, RNASeq
Depends: shiny, limma, Biobase, plotly, enrichR, R (>= 4.1.0)
Imports: DT, XML, httr, sva, xfun, edgeR, htmltools, factoextra,
        heatmaply, pheatmap, scales, shinyHeatmaply, shinybusy,
        ggplot2, stringr, umap, GEOquery, impute, grDevices, stats,
        graphics, markdown, knitr, utils, xml2, R.utils, readxl,
        shinycssloaders, car
Suggests: rmarkdown, usethis, testthat (>= 3.0.0)
VignetteBuilder: knitr
Config/testthat/edition: 3
PackageStatus: Deprecated
Config/pak/sysreqs: cmake libfreetype6-dev make libmagick++-dev gsfonts
        libicu-dev libpng-dev libuv1-dev libxml2-dev libssl-dev perl
        python3 libx11-dev zlib1g-dev
Repository: Bioconductor 3.23
Date/Publication: 2026-04-28 12:56:40 UTC
RemoteUrl: https://github.com/bioc/GEOexplorer
RemoteRef: RELEASE_3_23
RemoteSha: d9177c24e752a90eefcf4807be16ca14e45ba5ea
NeedsCompilation: no
Packaged: 2026-10-17 09:30:29 UTC; root
Author: Guy Hunt [aut, cre] (ORCID: <https://orcid.org/0000-0002-5217-2678>),
  Rafael Henkin [ctb, ths] (ORCID:
    <https://orcid.org/0000-0002-5511-5230>),
  Alfredo Iacoangeli [ctb, ths] (ORCID:
    <https://orcid.org/0000-0002-5280-5017>),
  Fabrizio Smeraldi [ctb, ths] (ORCID:
    <https://orcid.org/0000-0002-0057-8940>),
  Michael Barnes [ctb, ths] (ORCID:
    <https://orcid.org/0000-0001-9097-7381>)
Maintainer: Guy Hunt <guy.hunt@kcl.ac.uk>