Package: GEOfastq
Type: Package
Title: Downloads ENA Fastqs With GEO Accessions
Version: 1.20.0
Authors@R: person("Alex", "Pickering", email="alexvpickering@gmail.com", 
                  role=c("cre", "aut"), 
                  comment = c(ORCID = "0000-0002-0002-6759"))
Description: GEOfastq is used to download fastq files from the European
        Nucleotide Archive (ENA) starting with an accession from the
        Gene Expression Omnibus (GEO). To do this, sample metadata is
        retrieved from GEO and the Sequence Read Archive (SRA). SRA run
        accessions are then used to construct FTP and aspera download
        links for fastq files generated by the ENA.
License: MIT + file LICENSE
Encoding: UTF-8
RoxygenNote: 7.1.1
BugReports: https://github.com/alexvpickering/GEOfastq/issues
Imports: xml2, rvest, stringr, RCurl, doParallel, foreach, plyr
Suggests: BiocCheck, roxygen2, knitr, rmarkdown, testthat
biocViews: RNASeq, DataImport
VignetteBuilder: knitr
Config/pak/sysreqs: make libicu-dev libxml2-dev libssl-dev
Repository: Bioconductor 3.23
Date/Publication: 2026-04-28 12:54:38 UTC
RemoteUrl: https://github.com/bioc/GEOfastq
RemoteRef: RELEASE_3_23
RemoteSha: a168ade6fb68e8b81eb311ae98057ac97674da15
NeedsCompilation: no
Packaged: 2026-07-04 01:28:42 UTC; root
Author: Alex Pickering [cre, aut] (ORCID:
    <https://orcid.org/0000-0002-0002-6759>)
Maintainer: Alex Pickering <alexvpickering@gmail.com>