Package: GOSemSim
Type: Package
Title: GO-terms Semantic Similarity Measures
Version: 2.38.3
Authors@R: c( person(given = "Guangchuang", family = "Yu",             email = "guangchuangyu@gmail.com", role  = c("aut", "cre")),
              person(given = "Alexey",      family = "Stukalov",       email = "astukalov@gmail.com",     role  = "ctb"),
              person(given= "Pingfan",      family = "Guo",            email = "1178431277@qq.com",       role  = "ctb"),
              person(given = "Chuanle",     family = "Xiao",           email = "xiaochuanle@126.com",     role  = "ctb"),
              person(given = "Lluís",       family = "Revilla Sancho", email = "lluis.revilla@gmail.com", role  = "ctb")
             )
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Description: The semantic comparisons of Gene Ontology (GO) annotations
        provide quantitative ways to compute similarities between genes
        and gene groups, and have became important basis for many
        bioinformatics analysis approaches. GOSemSim is an R package
        for semantic similarity computation among GO terms, sets of GO
        terms, gene products and gene clusters. GOSemSim implemented
        five methods proposed by Resnik, Schlicker, Jiang, Lin and Wang
        respectively.
Depends: R (>= 4.2.0)
LinkingTo: Rcpp
Imports: AnnotationDbi, DBI, digest, GO.db, methods, rlang, stats,
        utils, yulab.utils (>= 0.2.3)
Suggests: AnnotationHub, BiocManager, clusterProfiler, DOSE, knitr,
        org.Hs.eg.db, prettydoc, readr, rmarkdown, testthat, tidyr,
        tidyselect, ROCR
VignetteBuilder: knitr
ByteCompile: true
License: Artistic-2.0
Encoding: UTF-8
URL: https://yulab-smu.top/biomedical-knowledge-mining-book/
BugReports: https://github.com/YuLab-SMU/GOSemSim/issues
Packaged: 2026-06-28 11:12:50 UTC; root
biocViews: Annotation, GO, Clustering, Pathways, Network, Software
Roxygen: list(markdown = TRUE)
Config/roxygen2/version: 8.0.0
Config/pak/sysreqs: cmake make libpng-dev libuv1-dev libssl-dev
        zlib1g-dev
Repository: Bioconductor 3.23
Date/Publication: 2026-06-28 07:34:48 UTC
RemoteUrl: https://github.com/bioc/GOSemSim
RemoteRef: RELEASE_3_23
RemoteSha: 6979ad7531563d8d0d91acf450d208fabd93b05d
NeedsCompilation: yes
Author: Guangchuang Yu [aut, cre],
  Alexey Stukalov [ctb],
  Pingfan Guo [ctb],
  Chuanle Xiao [ctb],
  Lluís Revilla Sancho [ctb]