Package: GSE62944 1.40.0

Bioconductor Package Maintainer

GSE62944: GEO accession data GSE62944 as a SummarizedExperiment

TCGA processed RNA-Seq data for 9264 tumor and 741 normal samples across 24 cancer types and made them available as GEO accession [GSE62944](http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE62944). GSE62944 data have been parsed into a SummarizedExperiment object available in ExperimentHub.

Authors:Sonali Arora

GSE62944_1.40.0.tar.gz
GSE62944_1.40.0.tar.gz(r-4.7-any)GSE62944_1.40.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
GSE62944/json (API)

# Install 'GSE62944' in R:

install.packages('GSE62944', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:GSE62944-1.41.0(data/experiment 3.24)GSE62944-1.40.0(data/experiment 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

experimentdata genome dnaseqdata rnaseqdata datapkg

4.00 score 5 scripts 0 exports 66 dependencies

Last updated from:84ca5d9e86 (on RELEASE_3_23). Checks:1 ERROR, 3 OK. Indexed: no.

This is a data package. Data packages may be large and do not get checked across all platforms.

Target	Result	Time
bioc-checks	ERROR	168
linux-devel	OK	283
source / vignettes	OK	249
linux-release	OK	248

Exports:

Dependencies:abind askpass Biobase BiocGenerics bit bit64 cli clipr cpp11 crayon curl data.table DelayedArray dplyr generics GenomicRanges GEOquery glue hms httr httr2 IRanges jsonlite lattice lifecycle limma magrittr Matrix MatrixGenerics matrixStats mime openssl pillar pkgconfig prettyunits progress purrr R.methodsS3 R.oo R.utils R6 readr rentrez rlang rvest S4Arrays S4Vectors selectr Seqinfo SparseArray statmod stringi stringr SummarizedExperiment sys tibble tidyr tidyselect tzdb utf8 vctrs vroom withr XML xml2 XVector

Raw TCGA data using Bioconductor's ExperimentHub

DE analysis with Raw TCGA data using Bioconductor's ExperimentHub and DESeq2 | Case Study | sessionInfo()

Rendered fromGSE62944.Rmdusingknitr::rmarkdown

Last update: 2016-04-01
Started: 2016-02-25

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
GEO accession GSE62944 available as an 'ExpressionSet' object.	GSE62944-package GSE62944