Package: GSReg 1.46.0

Bahman Afsari

GSReg: Gene Set Regulation (GS-Reg)

A package for gene set analysis based on the variability of expressions as well as a method to detect Alternative Splicing Events . It implements DIfferential RAnk Conservation (DIRAC) and gene set Expression Variation Analysis (EVA) methods. For detecting Differentially Spliced genes, it provides an implementation of the Spliced-EVA (SEVA).

Authors:Bahman Afsari <[email protected]>, Elana J. Fertig <[email protected]>

GSReg_1.46.0.tar.gz
GSReg_1.46.0.zip(r-4.7)GSReg_1.46.0.zip(r-4.6)GSReg_1.46.0.zip(r-4.5)
GSReg_1.46.0.tgz(r-4.6-x86_64)GSReg_1.46.0.tgz(r-4.6-arm64)GSReg_1.46.0.tgz(r-4.5-x86_64)GSReg_1.46.0.tgz(r-4.5-arm64)
GSReg_1.46.0.tar.gz(r-4.7-arm64)GSReg_1.46.0.tar.gz(r-4.7-x86_64)GSReg_1.46.0.tar.gz(r-4.6-arm64)GSReg_1.46.0.tar.gz(r-4.6-x86_64)
GSReg_1.46.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
GSReg/json (API)

# Install 'GSReg' in R:
install.packages('GSReg', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:GSReg-1.47.0(bioc 3.24)GSReg-1.46.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

generegulationpathwaysgeneexpressiongeneticvariabilitygenesetenrichmentalternativesplicing

4.03 score 18 scripts 350 downloads 3 mentions 7 exports 74 dependencies

Last updated from:481a2d9b48 (on RELEASE_3_23). Checks:1 FAIL, 11 WARNING, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksFAIL1478
linux-devel-arm64WARNING300
linux-devel-x86_64WARNING374
source / vignettesOK386
linux-release-arm64WARNING317
linux-release-x86_64WARNING360
macos-release-arm64WARNING206
macos-release-x86_64WARNING459
macos-oldrel-arm64WARNING237
macos-oldrel-x86_64WARNING412
windows-develWARNING481
windows-releaseWARNING397
windows-oldrelWARNING399
wasm-releaseOK224

Exports:GSReg.GeneSets.DIRACGSReg.GeneSets.EVAGSReg.kendall.tau.distanceGSReg.kendall.tau.distance.restrictedGSReg.kendall.tau.distance.templateGSReg.overlapJunctionGSReg.SEVA

Dependencies:abindAnnotationDbiaskpassBHBiobaseBiocGenericsBiocIOBiocManagerBiocParallelBiostringsbitbit64bitopsblobcachemcigarilloclicodetoolscpp11crayoncurlDBIDelayedArrayfastmapformatRfutile.loggerfutile.optionsgenericsGenomicAlignmentsGenomicFeaturesGenomicRangesglueGO.dbgraphHomo.sapienshttrIRangesjsonliteKEGGRESTlambda.rlatticelifecycleMatrixMatrixGenericsmatrixStatsmemoisemimeopensslorg.Hs.eg.dbOrganismDbipkgconfigpngR6RBGLRCurlrestfulrRhtslibrjsonrlangRsamtoolsRSQLitertracklayerS4ArraysS4VectorsSeqinfosnowSparseArraySummarizedExperimentsysTxDb.Hsapiens.UCSC.hg19.knownGenevctrsXMLXVectoryaml

Working with the GSReg package

Rendered fromGSReg.Rnwusingutils::Sweaveon Jun 03 2026.

Last update: 2018-11-16
Started: 2014-07-17