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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "GSVA" in publications use:'
type: software
license: Artistic-2.0
title: 'GSVA: Gene Set Variation Analysis for Microarray and RNA-Seq Data'
version: 2.6.2
doi: 10.1186/1471-2105-14-7
identifiers:
- type: doi
  value: 10.32614/CRAN.package.GSVA
abstract: Gene Set Variation Analysis (GSVA) is a non-parametric, unsupervised method
  for estimating variation of gene set enrichment through the samples of a expression
  data set. GSVA performs a change in coordinate systems, transforming the data from
  a gene by sample matrix to a gene-set by sample matrix, thereby allowing the evaluation
  of pathway enrichment for each sample. This new matrix of GSVA enrichment scores
  facilitates applying standard analytical methods like functional enrichment, survival
  analysis, clustering, CNV-pathway analysis or cross-tissue pathway analysis, in
  a pathway-centric manner.
authors:
- family-names: Castelo
  given-names: Robert
  email: robert.castelo@upf.edu
  orcid: https://orcid.org/0000-0003-2229-4508
- family-names: Guinney
  given-names: Justin
  email: jguinney@gmail.com
preferred-citation:
  type: article
  title: 'GSVA: gene set variation analysis for microarray and RNA-Seq data'
  authors:
  - family-names: H\"anzelmann
    given-names: Sonja
  - family-names: Castelo
    given-names: Robert
    email: robert.castelo@upf.edu
    orcid: https://orcid.org/0000-0003-2229-4508
  - family-names: Guinney
    given-names: Justin
    email: jguinney@gmail.com
  journal: BMC Bioinformatics
  volume: '14'
  year: '2013'
  url: https://doi.org/10.1186/1471-2105-14-7
  doi: 10.1186/1471-2105-14-7
  start: '7'
repository: https://bioc-release.r-universe.dev
repository-code: https://github.com/rcastelo/GSVA
commit: f5804d7c2a1bc55cb65c708eb427126e222d5841
url: https://github.com/rcastelo/GSVA
date-released: '2026-05-19'
contact:
- family-names: Castelo
  given-names: Robert
  email: robert.castelo@upf.edu
  orcid: https://orcid.org/0000-0003-2229-4508