Package: GeDi
Title: Defining and visualizing the distances between different
        genesets
Version: 1.8.0
Date: 2025-11-26
Authors@R: 
    c(
        person(
            given = "Annekathrin", family = "Nedwed", role = c("aut", "cre"),
            email = "anneludt@uni-mainz.de", comment = c(ORCID = "0000-0002-2475-4945")),
        person(
            given = "Federico", family = "Marini", role = c("aut"), 
            email = "marinif@uni-mainz.de", comment = c(ORCID = "0000-0003-3252-7758")
        )
    )
Description: The package provides different distances measurements to
        calculate the difference between genesets. Based on these
        scores the genesets are clustered and visualized as graph. This
        is all presented in an interactive Shiny application for easy
        usage.
Depends: R (>= 4.4.0)
Imports: Matrix, shiny, shinyWidgets, bs4Dash, rintrojs, utils, DT,
        dplyr, shinyBS, STRINGdb, igraph, visNetwork, shinycssloaders,
        fontawesome, grDevices, parallel, stats, ggplot2, plotly, expm,
        RColorBrewer, scales, readxl, ggdendro, ComplexHeatmap,
        BiocNeighbors, tm, wordcloud2, tools, BiocParallel,
        BiocFileCache, cluster, methods, circlize, proxyC, simona
Suggests: knitr, rmarkdown, testthat (>= 3.0.0), DESeq2, mosdef,
        GeneTonic, htmltools, AnnotationDbi, macrophage, topGO,
        biomaRt, ReactomePA, clusterProfiler, BiocStyle, org.Hs.eg.db
License: MIT + file LICENSE
Encoding: UTF-8
VignetteBuilder: knitr
URL: https://github.com/AnnekathrinSilvia/GeDi
BugReports: https://github.com/AnnekathrinSilvia/GeDi/issues
RoxygenNote: 7.3.3
Roxygen: list(markdown = TRUE)
Config/testthat/edition: 3
biocViews: GUI, GeneSetEnrichment, Software, Transcription, RNASeq,
        Visualization, Clustering, Pathways, ReportWriting, GO, KEGG,
        Reactome, ShinyApps
Config/pak/sysreqs: cmake libglpk-dev make libicu-dev libpng-dev
        libuv1-dev libxml2-dev libssl-dev perl zlib1g-dev
Repository: Bioconductor 3.23
Date/Publication: 2026-04-28 13:02:56 UTC
RemoteUrl: https://github.com/bioc/GeDi
RemoteRef: RELEASE_3_23
RemoteSha: 28cf7810d7ec9027791a67838b985de9c2e3e567
NeedsCompilation: no
Packaged: 2026-10-31 10:45:59 UTC; root
Author: Annekathrin Nedwed [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-2475-4945>),
  Federico Marini [aut] (ORCID: <https://orcid.org/0000-0003-3252-7758>)
Maintainer: Annekathrin Nedwed <anneludt@uni-mainz.de>