Package: GeoMxWorkflows Title: GeoMx Digital Spatial Profiler (DSP) data analysis workflows Description: Workflows for use with NanoString Technologies GeoMx Technology. Package provides bioconductor focused workflows for leveraging existing packages (e.g. GeomxTools) to process, QC, and analyze the data. Version: 1.18.0 Encoding: UTF-8 Authors@R: c(person("Maddy", "Griswold", email = "mgriswold@nanostring.com", role = c("cre", "aut")), person("Jason", "Reeves", role = c("aut")), person("Prajan", "Divakar", email = "pdivakar@nanostring.com", role = c("aut")), person("Nicole", "Ortogero", email = "nortogero@nanostring.com", role = c("aut")), person("Zhi", "Yang", role = c("aut")), person("Stephanie", "Zimmerman", role = c("aut")), person("Rona", "Vitancol", email = "rvitancol@nanostring.com", role = c("aut")), person("David", "Henderson", role = c("aut"))) Depends: R (>= 4.0), NanoStringNCTools, GeomxTools Imports: Biobase, S4Vectors, rjson, readxl, EnvStats, dplyr, reshape2, methods, utils, stats, data.table, outliers, BiocGenerics, ggplot2, ggrepel, ggforce, cowplot, scales, umap, Rtsne, pheatmap, BiocStyle, networkD3 Suggests: rmarkdown, knitr License: MIT BiocType: Workflow biocViews: GeneExpressionWorkflow, ImmunoOncologyWorkflow, SpatialWorkflow VignetteEngine: knitr::rmarkdown VignetteBuilder: knitr RoxygenNote: 7.2.3 Config/testthat/edition: 3 Config/pak/sysreqs: libcairo2-dev cmake libfontconfig1-dev libfreetype6-dev libglpk-dev make libicu-dev libpng-dev libuv1-dev libxml2-dev libssl-dev python3 zlib1g-dev Repository: Bioconductor 3.23 Date/Publication: 2026-04-28 12:44:52 UTC RemoteUrl: https://github.com/bioc/GeoMxWorkflows RemoteRef: RELEASE_3_23 RemoteSha: 3d45faa4e65ee8da035d1d844b8d45205bae3fc1 NeedsCompilation: no Packaged: 2026-10-11 12:53:02 UTC; root Author: Maddy Griswold [cre, aut], Jason Reeves [aut], Prajan Divakar [aut], Nicole Ortogero [aut], Zhi Yang [aut], Stephanie Zimmerman [aut], Rona Vitancol [aut], David Henderson [aut] Maintainer: Maddy Griswold