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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "GrafGen" in publications use:'
type: software
license: GPL-2.0-only
title: 'GrafGen: Classification of Helicobacter Pylori Genomes'
version: 1.8.0
doi: 10.1186/s12859-025-06294-y
identifiers:
- type: doi
  value: 10.32614/CRAN.package.GrafGen
abstract: To classify Helicobacter pylori genomes according to genetic distance from
  nine reference populations. The nine reference populations are hpgpAfrica, hpgpAfrica-distant,
  hpgpAfroamerica, hpgpEuroamerica, hpgpMediterranea, hpgpEurope, hpgpEurasia, hpgpAsia,
  and hpgpAklavik86-like. The vertex populations are Africa, Europe and Asia.
authors:
- family-names: Wheeler
  given-names: William
  email: wheelerb@imsweb.com
- family-names: Wang
  given-names: Difei
  email: difei.wang2@nih.gov
- family-names: Zhao
  given-names: Isaac
- family-names: Jin
  given-names: Yumi
- family-names: Rabkin
  given-names: Charles
  email: rabkinc@exchange.nih.gov
preferred-citation:
  type: article
  title: 'GrafGen: distance-based inference of population ancestry for Helicobacter
    pylori genomes'
  authors:
  - family-names: Wheeler
    given-names: William
    email: wheelerb@imsweb.com
  - family-names: Wang
    given-names: Difei
    email: difei.wang2@nih.gov
  - family-names: Zhao
    given-names: Isaac
  - family-names: Vale
    given-names: Filipa F.
  - family-names: Jin
    given-names: Yumi
  - family-names: Rabkin
    given-names: Charles S.
  journal: BMC Bioinformatics
  year: '2025'
  doi: 10.1186/s12859-025-06294-y
repository: https://bioc-release.r-universe.dev
repository-code: https://github.com/wheelerb/GrafGen
commit: 2680b1d32bce7b88920e0c2c2366ea53599521cd
url: https://github.com/wheelerb/GrafGen
date-released: '2024-12-16'
contact:
- family-names: Wheeler
  given-names: William
  email: wheelerb@imsweb.com