Package: Guitar 2.28.0

Jia Meng

Guitar: Guitar

The package is designed for visualization of RNA-related genomic features with respect to the landmarks of RNA transcripts, i.e., transcription starting site, start codon, stop codon and transcription ending site.

Authors:Xiao Du, Hui Liu, Lin Zhang, Jia Meng

Guitar_2.28.0.tar.gz
Guitar_2.28.0.zip(r-4.7)Guitar_2.28.0.zip(r-4.6)Guitar_2.28.0.zip(r-4.5)
Guitar_2.28.0.tgz(r-4.6-any)Guitar_2.28.0.tgz(r-4.5-any)
Guitar_2.28.0.tar.gz(r-4.7-any)Guitar_2.28.0.tar.gz(r-4.6-any)
Guitar_2.28.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html
card.svg |card.png
Guitar/json (API)
NEWS

# Install 'Guitar' in R:
install.packages('Guitar', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:Guitar-2.29.0(bioc 3.24)Guitar-2.28.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

sequencingsplicedalignmentalignmentdataimportrnaseqmethylseqqualitycontroltranscription

5.48 score 60 scripts 627 downloads 5 mentions 5 exports 86 dependencies

Last updated from:28a75337cf (on RELEASE_3_23). Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksERROR186
linux-devel-x86_64NOTE408
source / vignettesOK1199
linux-release-x86_64NOTE460
macos-release-arm64NOTE205
macos-oldrel-arm64NOTE187
windows-develNOTE391
windows-releaseNOTE401
windows-oldrelNOTE406
wasm-releaseOK160

Exports:GRangesListmapToTranscriptsGuitarPlotmakeGuitarTxdbnormalizesamplePoints

Dependencies:abindAnnotationDbiaskpassBHBiobaseBiocGenericsBiocIOBiocParallelBiostringsbitbit64bitopsblobcachemcigarilloclicodetoolscpp11crayoncurlDBIDelayedArraydplyrevaluatefarverfastmapformatRfutile.loggerfutile.optionsgenericsGenomicAlignmentsGenomicFeaturesGenomicRangesggplot2gluegtablehighrhttrIRangesisobandjsonliteKEGGRESTknitrlabelinglambda.rlatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatsmemoisemimeopensslpillarpkgconfigpngR6RColorBrewerRCurlrestfulrRhtslibrjsonrlangRsamtoolsRSQLitertracklayerS4ArraysS4VectorsS7scalesSeqinfosnowSparseArraySummarizedExperimentsystibbletidyselectutf8vctrsviridisLitewithrxfunXMLXVectoryaml

Guitar

Rendered fromGuitar-Overview.Rnwusingknitr::knitron May 24 2026.

Last update: 2019-04-25
Started: 2015-09-28

Readme and manuals

Help Manual

Help pageTopics
GRangesListmapToTranscriptsGRangesListmapToTranscripts
GuitarPlotGuitarPlot
makeGuitarTxdbmakeGuitarTxdb
normalizenormalize
samplePointssamplePoints