Package: Guitar 2.28.0
Guitar: Guitar
The package is designed for visualization of RNA-related genomic features with respect to the landmarks of RNA transcripts, i.e., transcription starting site, start codon, stop codon and transcription ending site.
Authors:
Guitar_2.28.0.tar.gz
Guitar_2.28.0.zip(r-4.7)Guitar_2.28.0.zip(r-4.6)Guitar_2.28.0.zip(r-4.5)
Guitar_2.28.0.tgz(r-4.6-any)Guitar_2.28.0.tgz(r-4.5-any)
Guitar_2.28.0.tar.gz(r-4.7-any)Guitar_2.28.0.tar.gz(r-4.6-any)
Guitar_2.28.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
Guitar/json (API)
NEWS
| # Install 'Guitar' in R: |
| install.packages('Guitar', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:Guitar-2.29.0(bioc 3.24)Guitar-2.28.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
sequencingsplicedalignmentalignmentdataimportrnaseqmethylseqqualitycontroltranscription
Last updated from:28a75337cf (on RELEASE_3_23). Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: no.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 186 | ||
| linux-devel-x86_64 | NOTE | 408 | ||
| source / vignettes | OK | 1199 | ||
| linux-release-x86_64 | NOTE | 460 | ||
| macos-release-arm64 | NOTE | 205 | ||
| macos-oldrel-arm64 | NOTE | 187 | ||
| windows-devel | NOTE | 391 | ||
| windows-release | NOTE | 401 | ||
| windows-oldrel | NOTE | 406 | ||
| wasm-release | OK | 160 |
Exports:GRangesListmapToTranscriptsGuitarPlotmakeGuitarTxdbnormalizesamplePoints
Dependencies:abindAnnotationDbiaskpassBHBiobaseBiocGenericsBiocIOBiocParallelBiostringsbitbit64bitopsblobcachemcigarilloclicodetoolscpp11crayoncurlDBIDelayedArraydplyrevaluatefarverfastmapformatRfutile.loggerfutile.optionsgenericsGenomicAlignmentsGenomicFeaturesGenomicRangesggplot2gluegtablehighrhttrIRangesisobandjsonliteKEGGRESTknitrlabelinglambda.rlatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatsmemoisemimeopensslpillarpkgconfigpngR6RColorBrewerRCurlrestfulrRhtslibrjsonrlangRsamtoolsRSQLitertracklayerS4ArraysS4VectorsS7scalesSeqinfosnowSparseArraySummarizedExperimentsystibbletidyselectutf8vctrsviridisLitewithrxfunXMLXVectoryaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| GRangesListmapToTranscripts | GRangesListmapToTranscripts |
| GuitarPlot | GuitarPlot |
| makeGuitarTxdb | makeGuitarTxdb |
| normalize | normalize |
| samplePoints | samplePoints |
