Package: HIBAG
Type: Package
Title: HLA Genotype Imputation with Attribute Bagging
Version: 1.48.2
Date: 2026-08-06
Depends: R (>= 3.2.0)
Imports: methods, RcppParallel
Suggests: parallel, ggplot2, reshape2, gdsfmt, SNPRelate, SeqArray (>=
        1.20.0), knitr, markdown, rmarkdown, Rsamtools
LinkingTo: RcppParallel (>= 5.0.0)
Authors@R: c(person("Xiuwen", "Zheng", role=c("aut", "cre", "cph"),
    email="zhengx@u.washington.edu", comment=c(ORCID="0000-0002-1390-0708")),
    person("Bruce", "Weir", role=c("ctb", "ths"),
    email="bsweir@u.washington.edu", comment=c(ORCID="0000-0002-4883-1247")))
Description: Imputes HLA classical alleles using GWAS SNP data, and it
        relies on a training set of HLA and SNP genotypes. HIBAG can be
        used by researchers with published parameter estimates instead
        of requiring access to large training sample datasets. It
        combines the concepts of attribute bagging, an ensemble
        classifier method, with haplotype inference for SNPs and HLA
        types. Attribute bagging is a technique which improves the
        accuracy and stability of classifier ensembles using bootstrap
        aggregating and random variable selection.
License: GPL-3
LazyData: yes
VignetteBuilder: knitr
SystemRequirements: GNU make
ByteCompile: TRUE
biocViews: Genetics, StatisticalMethod
URL: https://github.com/zhengxwen/HIBAG,
        https://hibag.s3.amazonaws.com/index.html
Config/pak/sysreqs: cmake make
Repository: Bioconductor 3.23
Date/Publication: 2026-08-09 03:02:55 UTC
RemoteUrl: https://github.com/bioc/HIBAG
RemoteRef: RELEASE_3_23
RemoteSha: cf593e8d42afa6e1862b724f3077d7a4c63bf7b3
NeedsCompilation: yes
Packaged: 2026-10-08 10:41:06 UTC; root
Author: Xiuwen Zheng [aut, cre, cph] (ORCID:
    <https://orcid.org/0000-0002-1390-0708>),
  Bruce Weir [ctb, ths] (ORCID: <https://orcid.org/0000-0002-4883-1247>)
Maintainer: Xiuwen Zheng <zhengx@u.washington.edu>