Package: HMMcopy
Type: Package
Title: Copy number prediction with correction for GC and mappability
        bias for HTS data
Version: 1.54.0
Date: 2021-11-22
Author: Daniel Lai, Gavin Ha, Sohrab Shah
Maintainer: Daniel Lai <dalai@bccrc.ca>
Import: data.table
Depends: R (>= 2.10.0), data.table (>= 1.11.8)
Description: Corrects GC and mappability biases for readcounts (i.e.
        coverage) in non-overlapping windows of fixed length for single
        whole genome samples, yielding a rough estimate of copy number
        for furthur analysis.  Designed for rapid correction of high
        coverage whole genome tumour and normal samples.
License: GPL-3
biocViews: Sequencing, Preprocessing, Visualization,
        CopyNumberVariation, Microarray
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2026-04-28 12:36:58 UTC
RemoteUrl: https://github.com/bioc/HMMcopy
RemoteRef: RELEASE_3_23
RemoteSha: 3650e28d0c431250e11438db73b1b9c8cf5ba7f6
NeedsCompilation: yes
Packaged: 2026-06-23 23:04:42 UTC; root