Package: Harman
Type: Package
Title: The removal of batch effects from datasets using a PCA and
        constrained optimisation based technique
Version: 1.40.0
Date: 2022-03-28
Authors@R: 
    c(person(given = "Yalchin",
             family="Oytam",
             email = "Yalchin.Oytam@health.nsw.gov.au",
             role = "aut"),
      person(given="Josh",
            family="Bowden",
            role = "aut"),
      person(given="Jason",
             family="Ross",
             email = "jason.ross@csiro.au",
             role = c("aut", "cre")))
Description: Harman is a PCA and constrained optimisation based
        technique that maximises the removal of batch effects from
        datasets, with the constraint that the probability of
        overcorrection (i.e. removing genuine biological signal along
        with batch noise) is kept to a fraction which is set by the
        end-user.
NeedsCompilation: yes
Suggests: HarmanData, BiocGenerics, BiocStyle, knitr, rmarkdown, RUnit,
        RColorBrewer, bladderbatch, limma, minfi, lumi, msmsEDA,
        affydata, minfiData, sva
Depends: R (>= 3.6)
Imports: Rcpp (>= 0.11.2), graphics, stats, Ckmeans.1d.dp, parallel,
        methods, matrixStats
LinkingTo: Rcpp
License: GPL-3 + file LICENCE
biocViews: BatchEffect, Microarray, MultipleComparison,
        PrincipalComponent, Normalization, Preprocessing,
        DNAMethylation, Transcription, Software, StatisticalMethod
VignetteBuilder: knitr
URL: http://www.bioinformatics.csiro.au/harman/
RoxygenNote: 7.3.3
Encoding: UTF-8
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2026-04-28 12:43:26 UTC
RemoteUrl: https://github.com/bioc/Harman
RemoteRef: RELEASE_3_23
RemoteSha: fac5c4b4f299dbc6ccc0fa1861bef70915c85e30
Packaged: 2026-06-23 22:53:21 UTC; root
Author: Yalchin Oytam [aut],
  Josh Bowden [aut],
  Jason Ross [aut, cre]
Maintainer: Jason Ross <jason.ross@csiro.au>