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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "Harman" in publications use:'
type: software
license: GPL-3.0-only
title: 'Harman: The removal of batch effects from datasets using a PCA and constrained
  optimisation based technique'
version: 1.40.0
doi: 10.1186/s12859-016-1212-5
identifiers:
- type: doi
  value: 10.32614/CRAN.package.Harman
abstract: Harman is a PCA and constrained optimisation based technique that maximises
  the removal of batch effects from datasets, with the constraint that the probability
  of overcorrection (i.e. removing genuine biological signal along with batch noise)
  is kept to a fraction which is set by the end-user.
authors:
- family-names: Oytam
  given-names: Yalchin
  email: Yalchin.Oytam@health.nsw.gov.au
- family-names: Bowden
  given-names: Josh
- family-names: Ross
  given-names: Jason
  email: jason.ross@csiro.au
preferred-citation:
  type: article
  title: 'Risk-conscious correction of batch effects: maximising information extraction
    from high-throughput genomic datasets'
  authors:
  - family-names: Oytam
    given-names: Yalchin
    email: Yalchin.Oytam@health.nsw.gov.au
  - family-names: Sobhanmanesh
    given-names: Fariborz
  - family-names: Duesing
    given-names: Konsta
  - family-names: Bowden
    given-names: Joshua C.
  - family-names: Osmond-McLeod
    given-names: Megan
  - family-names: Ross
    given-names: Jason
    email: jason.ross@csiro.au
  year: '2016'
  journal: BMC Bioinformatics
  volume: '17'
  issue: '1'
  doi: 10.1186/s12859-016-1212-5
  url: http://dx.doi.org/10.1186/s12859-016-1212-5
  start: '1'
  end: '17'
repository: https://bioc-release.r-universe.dev
commit: fac5c4b4f299dbc6ccc0fa1861bef70915c85e30
url: http://www.bioinformatics.csiro.au/harman/
date-released: '2022-03-28'
contact:
- family-names: Ross
  given-names: Jason
  email: jason.ross@csiro.au