Package: HarmonizedTCGAData 1.34.0

Tianle Ma

HarmonizedTCGAData: Processed Harmonized TCGA Data of Five Selected Cancer Types

This package contains the processed harmonized TCGA data of five cancer types used in "Tianle Ma and Aidong Zhang, Integrate Multi-omic Data Using Affinity Network Fusion (ANF) for Cancer Patient Clustering".

Authors:Tianle Ma

HarmonizedTCGAData_1.34.0.tar.gz
HarmonizedTCGAData_1.34.0.tar.gz(r-4.7-any)HarmonizedTCGAData_1.34.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
HarmonizedTCGAData/json (API)

# Install 'HarmonizedTCGAData' in R:

install.packages('HarmonizedTCGAData', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Datasets:

project_ids - Project_ids
surv.plot - Surv.plot

On BioConductor:HarmonizedTCGAData-1.35.0(data/experiment 3.24)HarmonizedTCGAData-1.34.0(data/experiment 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

cancerdata reproducibleresearch datapkg

4.00 score 2 scripts 0 exports 57 dependencies

Last updated from:4fff4253b4 (on RELEASE_3_23). Checks:1 ERROR, 3 OK. Indexed: no.

This is a data package. Data packages may be large and do not get checked across all platforms.

Target	Result	Time
bioc-checks	ERROR	136
linux-devel	OK	261
source / vignettes	OK	230
linux-release	OK	280

Exports:

Dependencies:AnnotationDbi AnnotationHub askpass Biobase BiocBaseUtils BiocFileCache BiocGenerics BiocManager BiocVersion Biostrings bit bit64 blob cachem cli cpp11 crayon curl DBI dbplyr dplyr ExperimentHub fastmap filelock generics glue httr httr2 IRanges jsonlite KEGGREST lifecycle magrittr memoise mime openssl pillar pkgconfig png purrr R6 rappdirs rlang RSQLite S4Vectors Seqinfo stringi stringr sys tibble tidyr tidyselect utf8 vctrs withr XVector yaml

Affinity Matrices of 2582 Patients Derived from Harmonized TCGA Dataset

Rendered fromHarmonizedTCGAData.Rmdusingknitr::rmarkdown

Last update: 2017-10-13
Started: 2017-10-09

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
HarmonizedTCGAData.	HarmonizedTCGAData-package HarmonizedTCGAData
project_ids	project_ids
surv.plot	surv.plot
Wall	Wall