| Title: | HiContacts companion data package |
|---|---|
| Description: | Provides a collection of Hi-C files (pairs, (m)cool and fastq). These datasets can be read into R and further investigated and visualized with the HiContacts package. Data includes yeast Hi-C data generated by the Koszul lab from the Pasteur Institute. |
| Authors: | Jacques Serizay [aut, cre] |
| Maintainer: | Jacques Serizay <[email protected]> |
| License: | MIT + file LICENSE |
| Version: | 1.14.0 |
| Built: | 2026-10-10 11:15:56 UTC |
| Source: | https://github.com/bioc/HiContactsData |
Downloads different types of Hi-C processed files (cool, mcool, pairs.gz, fastq) and returns the path of the cached file.
HiContactsData(sample = NULL, format = NULL)HiContactsData(sample = NULL, format = NULL)
sample |
sample |
format |
format |
Local path of the queried file cached with BiocFileCache.
HiContactsData(sample = 'yeast_wt', format = 'cool')HiContactsData(sample = 'yeast_wt', format = 'cool')