# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "HiCool" in publications use:'
type: software
license: MIT
title: 'HiCool: HiCool'
version: 1.12.0
doi: 10.1038/s41467-024-44761-x
identifiers:
- type: doi
  value: 10.32614/CRAN.package.HiCool
abstract: HiCool provides an R interface to process and normalize Hi-C paired-end
  fastq reads into .(m)cool files. .(m)cool is a compact, indexed HDF5 file format
  specifically tailored for efficiently storing HiC-based data. On top of processing
  fastq reads, HiCool provides a convenient reporting function to generate shareable
  reports summarizing Hi-C experiments and including quality controls.
authors:
- family-names: Serizay
  given-names: Jacques
  email: jacquesserizay@gmail.com
preferred-citation:
  type: article
  title: Orchestrating chromosome conformation capture analysis with Bioconductor
  authors:
  - family-names: Serizay
    given-names: Jacques
    email: jacquesserizay@gmail.com
  - family-names: Matthey-Doret
    given-names: Cyril
  - family-names: Bignaud
    given-names: Amaury
  - family-names: Baudry
    given-names: Lyam
  - family-names: Koszul
    given-names: Romain
  journal: Nature Communications
  year: '2024'
  volume: '15'
  doi: 10.1038/s41467-024-44761-x
  start: '1'
  end: '9'
repository: https://bioc-release.r-universe.dev
repository-code: https://github.com/js2264/HiCool
commit: 60d11125d6ca6059874db3d63947e569b0bc20ce
url: https://github.com/js2264/HiCool
date-released: '2022-11-04'
contact:
- family-names: Serizay
  given-names: Jacques
  email: jacquesserizay@gmail.com