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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "ILoReg" in publications use:'
type: software
license: GPL-3.0-only
title: 'ILoReg: ILoReg: a tool for high-resolution cell population identification
  from scRNA-Seq data'
version: 1.22.0
doi: 10.1093/bioinformatics/btaa919
identifiers:
- type: doi
  value: 10.32614/CRAN.package.ILoReg
abstract: ILoReg is a tool for identification of cell populations from scRNA-seq data.
  In particular, ILoReg is useful for finding cell populations with subtle transcriptomic
  differences. The method utilizes a self-supervised learning method, called Iteratitive
  Clustering Projection (ICP), to find cluster probabilities, which are used in noise
  reduction prior to PCA and the subsequent hierarchical clustering and t-SNE steps.
  Additionally, functions for differential expression analysis to find gene markers
  for the populations and gene expression visualization are provided.
authors:
- family-names: Smolander
  given-names: Johannes
  email: johannes.smolander@gmail.com
- family-names: Junttila
  given-names: Sini
- family-names: Venäläinen
  given-names: Mikko S
- family-names: Elo
  given-names: Laura L
preferred-citation:
  type: article
  title: 'ILoReg: a tool for high-resolution cell population identification from single-cell
    RNA-seq data'
  authors:
  - family-names: Smolander
    given-names: Johannes
    email: johannes.smolander@gmail.com
  - family-names: Junttila
    given-names: Sini
  - family-names: Venalainen
    given-names: Mikko S
  - family-names: Elo
    given-names: Laura L
  year: '2021'
  journal: Bioinformatics
  notes: R package version 1.22.0
  url: https://doi.org/10.1093/bioinformatics/btaa919
  doi: 10.1093/bioinformatics/btaa919
repository: https://bioc-release.r-universe.dev
repository-code: https://github.com/elolab/ILoReg
commit: 8e9a0eba9d57666680b5c9a6ec345f46c27bce2b
url: https://github.com/elolab/ILoReg
date-released: '2026-04-28'
contact:
- family-names: Smolander
  given-names: Johannes
  email: johannes.smolander@gmail.com