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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "INDEED" in publications use:'
type: software
license: Artistic-2.0
title: 'INDEED: Interactive Visualization of Integrated Differential Expression and
  Differential Network Analysis for Biomarker Candidate Selection Package'
version: 2.26.0
doi: 10.32614/CRAN.package.INDEED
abstract: 'An R package for integrated differential expression and differential network
  analysis based on omic data for cancer biomarker discovery. Both correlation and
  partial correlation can be used to generate differential network to aid the traditional
  differential expression analysis to identify changes between biomolecules on both
  their expression and pairwise association levels. A detailed description of the
  methodology has been published in Methods journal (PMID: 27592383). An interactive
  visualization feature allows for the exploration and selection of candidate biomarkers.'
authors:
- family-names: Zuo
  given-names: Yiming
  email: hwr@georgetown.edu
- family-names: Ghaffari
  given-names: Kian
  email: kg.ghaffari@gmail.com
- family-names: Li
  given-names: Zhenzhi
  email: zzrickli@gmail.com
repository: https://bioc-release.r-universe.dev
repository-code: http://github.com/ressomlab/INDEED
commit: e2963e7130478e6e1bd5b1ceae7fada85b89fed4
url: http://github.com/ressomlab/INDEED
date-released: '2026-04-28'
contact:
- family-names: Zuo
  given-names: Yiming
  email: hwr@georgetown.edu