Package: IVAS 2.32.0

Seonggyun Han

IVAS: Identification of genetic Variants affecting Alternative Splicing

Identification of genetic variants affecting alternative splicing.

Authors:Seonggyun Han, Sangsoo Kim

IVAS_2.32.0.tar.gz
IVAS_2.32.0.zip(r-4.7)IVAS_2.32.0.zip(r-4.6)IVAS_2.32.0.zip(r-4.5)
IVAS_2.32.0.tgz(r-4.6-any)IVAS_2.32.0.tgz(r-4.5-any)
IVAS_2.32.0.tar.gz(r-4.7-any)IVAS_2.32.0.tar.gz(r-4.6-any)
IVAS_2.32.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
IVAS/json (API)
NEWS

# Install 'IVAS' in R:
install.packages('IVAS', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:

On BioConductor:IVAS-2.33.0(bioc 3.24)IVAS-2.32.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

immunooncologyalternativesplicingdifferentialexpressiondifferentialsplicinggeneexpressiongeneregulationregressionrnaseqsequencingsnpsoftwaretranscription

4.48 score 1 scripts 376 downloads 49 mentions 11 exports 102 dependencies

Last updated from:b56f872e4c (on RELEASE_3_23). Checks:1 ERROR, 7 WARNING, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksERROR208
linux-devel-x86_64WARNING479
source / vignettesOK309
linux-release-x86_64WARNING406
macos-release-arm64WARNING218
macos-oldrel-arm64WARNING194
windows-develWARNING320
windows-releaseWARNING323
windows-oldrelWARNING354
wasm-releaseOK162

Exports:calSignificantCalSigSNPchrseparatefindAlternativefindOversnpMsqtlFinderRatioFromFPKMsaveBplotSplicingfindersqtlfindersQTLsFinder

Dependencies:abindAnnotationDbiaskpassBHBiobaseBiocGenericsBiocIOBiocParallelBiostringsbitbit64bitopsblobbootcachemcigarilloclicodetoolscpp11crayoncurlDBIDelayedArraydoParalleldplyrfarverfastmapforeachformatRfutile.loggerfutile.optionsgenericsGenomicAlignmentsGenomicFeaturesGenomicRangesggfortifyggplot2gluegridExtragtablehttrIRangesisobanditeratorsjsonliteKEGGRESTlabelinglambda.rlatticelifecyclelme4magrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemimeminqanlmenloptropensslpillarpkgconfigpngpurrrR6rbibutilsRColorBrewerRcppRcppEigenRCurlRdpackreformulasrestfulrRhtslibrjsonrlangRsamtoolsRSQLitertracklayerS4ArraysS4VectorsS7scalesSeqinfosnowSparseArraystringistringrSummarizedExperimentsystibbletidyrtidyselectutf8vctrsviridisLitewithrXMLXVectoryaml

IVAS : Identification of genetic Variants affecting Alternative Splicing

Rendered fromIVAS.Rnwusingutils::Sweaveon May 29 2026.

Last update: 2017-03-09
Started: 2015-01-14