Package: Icens 1.84.0

Bioconductor Package Maintainer

Icens: NPMLE for Censored and Truncated Data

Many functions for computing the NPMLE for censored and truncated data.

Authors:R. Gentleman and Alain Vandal

# Install 'Icens' in R:

install.packages('Icens', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Datasets:

cmv - Data on times to shedding of cytomegalovirus and to colonization of mycobacterium avium complex.
cosmesis - The time taken until cosmetic deterioration of breast cosmesis.
hiv - Intervals for infection time and disease onset for 257 hemophiliac patients.
pruitt - A small artificial, bivariate right-censored data set.

On BioConductor:Icens-1.85.0(bioc 3.24)Icens-1.84.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

Last updated from:3cbcdf8f52 (on RELEASE_3_23). Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: no.

Target	Result	Time
bioc-checks	ERROR	144
linux-devel-x86_64	NOTE	133
source / vignettes	OK	159
linux-release-x86_64	NOTE	211
macos-release-arm64	NOTE	80
macos-oldrel-arm64	NOTE	106
windows-devel	NOTE	79
windows-release	NOTE	75
windows-oldrel	NOTE	73
wasm-release	OK	120

Help page	Topics
An implementation of the bisection algorithm for root finding.	Bisect
Find the bivariate cliques from the marginal data.	BVcliques
Compute the clique matrix from the clique list.	BVclmat
Compute the support for the cliques of a bivariate intersection graph.	BVsupport
Data on times to shedding of cytomegalovirus and to colonization of mycobacterium avium complex.	cmv
The time taken until cosmetic deterioration of breast cosmesis.	cosmesis
A function to compute the NPMLE of p based on the incidence matrix A.	EM
Compute the NPMLE for censored data using the EMICM.	EMICM
Intervals for infection time and disease onset for 257 hemophiliac patients.	hiv
Internal Icens functions	BVmacprod EMICMmac Intersection rescaleP Subset VEMICMmac
The class of objects returned by the estimation routines in the Icens library.	icsurv
Estimate the NPMLE of censored data using the ISDM method proposed in Lesperance and Kalbfleisch (19	ISDM
A function to	Maclist
A function to compute the incidence matrix for an intersection graph.	Macmat
Compute the real representation for the maximal cliques.	MLEintvl
An implementation of the projected gradient methods for finding the NPMLE.	PGM
A plot method for the estimates produced by the estimation methods in Icens.	plot.icsurv
Plot the event time regions for bivariate data.	Plotboxes
Implement the pool monotone groups algorithm.	PMGA
A small artificial, bivariate right-censored data set.	pruitt
Compute the NPMLE of p via the Vertex Exchange Method.	VEM