Package: IntramiRExploreR 1.34.0

Surajit Bhattacharya

IntramiRExploreR: Predicting Targets for Drosophila Intragenic miRNAs

Intra-miR-ExploreR, an integrative miRNA target prediction bioinformatics tool, identifies targets combining expression and biophysical interactions of a given microRNA (miR). Using the tool, we have identified targets for 92 intragenic miRs in D. melanogaster, using available microarray expression data, from Affymetrix 1 and Affymetrix2 microarray array platforms, providing a global perspective of intragenic miR targets in Drosophila. Predicted targets are grouped according to biological functions using the DAVID Gene Ontology tool and are ranked based on a biologically relevant scoring system, enabling the user to identify functionally relevant targets for a given miR.

Authors:Surajit Bhattacharya and Daniel Cox

IntramiRExploreR_1.34.0.tar.gz
IntramiRExploreR_1.34.0.zip(r-4.7)IntramiRExploreR_1.34.0.zip(r-4.6)IntramiRExploreR_1.34.0.zip(r-4.5)
IntramiRExploreR_1.34.0.tgz(r-4.6-any)IntramiRExploreR_1.34.0.tgz(r-4.5-any)
IntramiRExploreR_1.34.0.tar.gz(r-4.7-any)IntramiRExploreR_1.34.0.tar.gz(r-4.6-any)
IntramiRExploreR_1.34.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
IntramiRExploreR/json (API)

# Install 'IntramiRExploreR' in R:
install.packages('IntramiRExploreR', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/vilainlab/intramirexplorer/issues

Datasets:

On BioConductor:IntramiRExploreR-1.35.0(bioc 3.24)IntramiRExploreR-1.34.0(bioc 3.23)

softwaremicroarraygenetargetstatisticalmethodgeneexpressiongeneprediction

4.60 score 6 scripts 421 downloads 7 exports 30 dependencies

Last updated from:51681e8f36 (on RELEASE_3_23). Checks:1 ERROR, 7 WARNING, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksERROR186
linux-devel-x86_64WARNING213
source / vignettesOK220
linux-release-x86_64WARNING200
macos-release-arm64WARNING180
macos-oldrel-arm64WARNING97
windows-develWARNING113
windows-releaseWARNING135
windows-oldrelWARNING143
wasm-releaseOK163

Exports:extract_HostGeneextract_intragenic_miRGene_Visualisationgenes_StatGetGOS_ALLmiRTargets_StatVisualisation

Dependencies:clicpp11evaluateFGNetgluehighrhwriterigraphknitrlatticelifecyclemagrittrMatrixpkgconfigplotrixplyrpngR.methodsS3R.ooR.utilsRColorBrewerRcppreshape2rlangstringistringrvctrsxfunXMLyaml

IntramiRExploreR_Vignettes_ver05

Surajit Bhattacharyal and Daniel N. Cox

Rendered fromIntramiRExploreR_vignettes.Rmdusingknitr::rmarkdownon Jun 02 2026.

Last update: 2021-08-20
Started: 2017-03-31