Why perform correction for natural stable isotope abundance and tracer purity? | What is IsoCorrectoR? | IsoCorrectoR packages: IsoCorrectoR and IsoCorrectoRGUI | Installing IsoCorrectoR | Requirements | General (IsoCorrectoR and IsoCorrectoRGUI) | Graphical user interface version only (IsoCorrectoRGUI) | Installation | How to use IsoCorrectoR | Using IsoCorrectoR via the graphical user interface (IsoCorrectoRGUI package) | Parameters that can be set in the graphical user interface: | Using IsoCorrectoR via the R console (IsoCorrectoR and IsoCorrectoRGUI package) | Function call: | Basic arguments: | Advanced arguments (usually need not be changed): | Returned value | Result files produced by IsoCorrectoR | Starting IsoCorrectoR GUI directly under Windows (IsoCorrectoRGUI package) | Input files and parameters | Input files | Molecule information file | Example for molecule information file structure | Measurement file | Example for measurement file structure | Handling of missing values in the measurement file | Element information file | Example for element information file structure | Basic correction parameters | Tracer purity correction | Correction of tracer element natural abundance in the core molecule | Normal/High resolution correction | Advanced correction parameters | Correction results for monoisotopic species | Calculation thresholds | SessionInfo | References
Package: IsoCorrectoRGUI 1.28.0
Christian Kohler
IsoCorrectoRGUI: Graphical User Interface for IsoCorrectoR
IsoCorrectoRGUI is a Graphical User Interface for the IsoCorrectoR package. IsoCorrectoR performs the correction of mass spectrometry data from stable isotope labeling/tracing metabolomics experiments with regard to natural isotope abundance and tracer impurity. Data from both MS and MS/MS measurements can be corrected (with any tracer isotope: 13C, 15N, 18O...), as well as high resolution MS data from multiple-tracer experiments (e.g. 13C and 15N used simultaneously).
Authors:
IsoCorrectoRGUI_1.28.0.tar.gz
IsoCorrectoRGUI_1.28.0.zip(r-4.7-any)IsoCorrectoRGUI_1.28.0.zip(r-4.6-any)IsoCorrectoRGUI_1.28.0.zip(r-4.5-any)
IsoCorrectoRGUI_1.28.0.tgz(r-4.6-any)IsoCorrectoRGUI_1.28.0.tgz(r-4.5-any)
IsoCorrectoRGUI_1.28.0.tar.gz(r-4.7-any)IsoCorrectoRGUI_1.28.0.tar.gz(r-4.6-any)
IsoCorrectoRGUI_1.28.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
IsoCorrectoRGUI/json (API)
| # Install 'IsoCorrectoRGUI' in R: |
| install.packages('IsoCorrectoRGUI', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:IsoCorrectoRGUI-1.29.0(bioc 3.24)IsoCorrectoRGUI-1.28.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
softwaremetabolomicsmassspectrometrypreprocessingguiimmunooncology
Last updated from:fb47667ca0 (on RELEASE_3_23). Checks:1 NOTE, 9 OK. Indexed: no.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | NOTE | 135 | ||
| linux-devel | OK | 182 | ||
| source / vignettes | OK | 204 | ||
| linux-release | OK | 223 | ||
| macos-release | OK | 85 | ||
| macos-oldrel | OK | 118 | ||
| windows-devel | OK | 92 | ||
| windows-release | OK | 94 | ||
| windows-oldrel | OK | 99 | ||
| wasm-release | OK | 113 |
Exports:GetGUIstatusIsoCorrectionGUI
Dependencies:bitbit64cellrangerclicliprcpp11crayondplyrgenericsgluehmsIsoCorrectoRlifecyclemagrittrpillarpkgconfigpracmaprettyunitsprogressquadprogR6readrreadxlrematchrlangstringistringrtcltk2tibbletidyselecttzdbutf8vctrsvroomwithrWriteXLS
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Function to get activation status of IsoCorrectoR GUI | GetGUIstatus |
| Graphical User Interface for IsoCorrectoR | IsoCorrectionGUI |