Package 'JASPAR2016'

Title: Data package for JASPAR 2016
Description: Data package for JASPAR 2016. To search this databases, please use the package TFBSTools (>= 1.8.1).
Authors: Ge Tan <[email protected]>
Maintainer: Ge Tan <[email protected]>
License: GPL-2
Version: 1.40.0
Built: 2026-10-10 11:07:46 UTC
Source: https://github.com/bioc/JASPAR2016

Help Index

JASPAR2016 object

Description

The JASPAR2016 object class is a thin class for storing the path of JASPAR2016 style SQLite file.

Slots

db:

Object of class "character": a character string of the path of SQLite file.

Author(s)

Ge Tan

Examples

## Not run: 
    library(JASPAR2016)
    JASPAR2016

    library(TFBSTools)

    opts <- list()
    opts[["species"]] <- 9606
    opts[["type"]] <- "SELEX"
    opts[["all_versions"]] <- TRUE
    PFMatrixList <- getMatrixSet(JASPAR2016, opts)

    opts2 <- list()
    opts2[["type"]] <- "SELEX"
    PFMatrixList2 <- getMatrixSet(JASPAR2016, opts2)
  
## End(Not run)