NEWS

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KEGGREST 1.52.0

SIGNIFICANT USER-VISIBLE CHANGES

• The "organism" KEGG endpoint has stopped working due to upstream changes, the "genome" endpoint can be used instead with 'keggList("genome")' (@assaron, #30)
• The 'mark.pathway.by.objects' function has been removed.

BUG FIXES AND MINOR IMPROVEMENTS

• Updated 'color.pathway.by.objects' to align with the new KEGG Map Coloring web application specifications, using space-separated multi-query format.
• Added unit tests and examples for querying the KEGG Orthology database e.g., 'keggLink("ko", "sce")' (@assaron, #38)

KEGGREST 1.48.1

SIGNIFICANT USER-VISIBLE CHANGES

• Defunct 'mark.pathway.by.objects' function (no longer supported).

KEGGREST 1.46.0

BUG FIXES

• 1.45.1 Fix keggFind URL to use '+' instead of spaces.

KEGGREST 1.42.0

SIGNIFICANT USER-VISIBLE CHANGES

• 'keggCompounds' lists compound IDs for a given pathway (@KristinaRiemer, #6).

BUG FIXES

• Update URL path in '.get.kegg.url' from 'tmp' to 'kegg' subfolder.

KEGGREST 1.37.0

BUG CORRECTION

• 1.37.1 Fixes new endpoint
• 1.37.2 http to https fixes windows error

KEGGREST 1.0.0

SIGNIFICANT USER-VISIBLE CHANGES

• Package introduced.

NEW FEATURES

• Package introduced.