Package 'KEGGandMetacoreDzPathwaysGEO'

Title: Disease Datasets from GEO
Description: This is a collection of 18 data sets for which the phenotype is a disease with a corresponding pathway in either KEGG or metacore database.This collection of datasets were used as gold standard in comparing gene set analysis methods.
Authors: Gaurav Bhatti
Maintainer: Gaurav Bhatti <[email protected]>
License: GPL-2
Version: 1.32.0
Built: 2026-10-10 11:07:28 UTC
Source: https://github.com/bioc/KEGGandMetacoreDzPathwaysGEO

Help Index

GEO Data Sets used to compare gene set analysis methods.

Description

This is a collection of 18 GEO datasets for which the phenotype is a disease with a corresponding pathway in either of the two popular gene to pathway annotation databases, KEGG and Metacore. These datasets were used as gold standard in comparing gene set analysis methods in the research article:

Tarca AL, Bhatti G, Romero R (2013) A Comparison of Gene Set Analysis Methods in Terms of Sensitivity, Prioritization and Specificity. PLoS ONE 8(11): e79217. doi:10.1371/journal.pone.0079217

GEOID Pubmed Ref. Disease/Target pathway KEGGID Tissue
GSE1145 - - Dilated cardiomyopathy hsa5414 Left Ventricle
GSE11906 19852842 pmid19852842 COPD Chronic obstructive pulmonary disease Airway epithelial cells
GSE14924_CD4 19710498 pmid19710498 Acute myeloid leukemia hsa5221 CD4 T cells
GSE14924_CD8 19710498 pmid19710498 Acute myeloid leukemia hsa5221 CD8 T cells
GSE16759 20126538 pmid20126538 Alzheimer's disease hsa5010 Parietal lobe
GSE19420 22802091 pmid22802091 Type II diabetes mellitus hsa4930 Vastus lateralis muscle
GSE20164 20926834 pmid20926834 Parkinson's disease hsa5012 Substantia nigra
GSE23878 21281787 pmid21281787 Colorectal cancer hsa5210 Colon
GSE24739_G0 21436996 pmid21436996 Chronic myeloid leukemia hsa5220 Peripheral blood
GSE24739_G1 21436996 pmid21436996 Chronic myeloid leukemia hsa5220 Peripheral blood
GSE30153 21886837 pmid21886837 Lupus Erythematosus Systemic Lupus Erythematosus Systemic Peripheral blood
GSE32676 22261810 pmid22261810 Pancreatic cancer hsa5212 Pancreas
GSE38666_epithelia 23762861 pmid23762861 Ovarian cancer Ovarian Neoplasms1 Ovarian Surface Epithelium
GSE38666_stroma 23762861 pmid23762861 Ovarian cancer Ovarian Neoplasms1 Ovarian Stroma
GSE4183 19461970 pmid19461970 Colorectal cancer hsa5210 Colon
GSE42057 23590301 pmid23590301 Chronic obstructive pulmonary disease Chronic obstructive pulmonary disease PBMC
GSE7305 17640886 pmid17640886 Endometrial cancer hsa5213 Ovarian tissue
GSE22780 - - Pancreatic Neoplasms Pancreatic Neoplasms Pancreas

Details

Package: KEGGandMetacoreDzPathwaysGEO
Type: Package
Version: 0.99.4
Date: 2014-02-28
License: GPL-2

Author(s)

Gaurav Bhatti <[email protected]>

References

Tarca AL, Bhatti G, Romero R (2013) A Comparison of Gene Set Analysis Methods in Terms of Sensitivity, Prioritization and Specificity. PLoS ONE 8(11): e79217. doi:10.1371/journal.pone.0079217

See Also

http://www.bioconductor.org/packages/release/data/experiment/html/KEGGdzPathwaysGEO.html

Examples

mysets=data(package="KEGGandMetacoreDzPathwaysGEO")$results[,"Item"]
mysets
data(GSE1145)

set=mysets[1]
data(list=set,package="KEGGandMetacoreDzPathwaysGEO")

Data Set Id: GSE1145

Description

For detailed description visit: http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE1145

Usage

data(GSE1145)

Format

The format is: Formal class 'ExpressionSet' [package "Biobase"] with 7 slots ..@ experimentData :Formal class 'MIAME' [package "Biobase"] with 13 slots .. .. ..@ name : chr "GSE1145" .. .. ..@ lab : chr "" .. .. ..@ contact : chr "" .. .. ..@ title : chr "" .. .. ..@ abstract : chr "" .. .. ..@ url : chr "http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE1145" .. .. ..@ pubMedIds : chr "" .. .. ..@ samples : list() .. .. ..@ hybridizations : list() .. .. ..@ normControls : list() .. .. ..@ preprocessing : list() .. .. ..@ other :List of 3 .. .. .. ..$ design : chr "Not Paired" .. .. .. ..$ targetGeneSets: chr "05414" .. .. .. ..$ disease : chr "Dilated cardiomyopathy" .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 2 .. .. .. .. .. ..$ : int [1:3] 1 0 0 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ assayData :<environment: 0x29f44c0> ..@ phenoData :Formal class 'AnnotatedDataFrame' [package "Biobase"] with 4 slots .. .. ..@ varMetadata :'data.frame': 2 obs. of 1 variable: .. .. .. ..$ labelDescription: chr [1:2] NA NA .. .. ..@ data :'data.frame': 26 obs. of 2 variables: .. .. .. ..$ Sample: chr [1:26] "GSM18442" "GSM18443" "GSM18444" "GSM18445" ... .. .. .. ..$ Group : chr [1:26] "c" "c" "c" "c" ... .. .. ..@ dimLabels : chr [1:2] "sampleNames" "sampleColumns" .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 1 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ featureData :Formal class 'AnnotatedDataFrame' [package "Biobase"] with 4 slots .. .. ..@ varMetadata :'data.frame': 0 obs. of 1 variable: .. .. .. ..$ labelDescription: chr(0) .. .. ..@ data :'data.frame': 54675 obs. of 0 variables .. .. ..@ dimLabels : chr [1:2] "featureNames" "featureColumns" .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 1 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ annotation : chr "hgu133plus2" ..@ protocolData :Formal class 'AnnotatedDataFrame' [package "Biobase"] with 4 slots .. .. ..@ varMetadata :'data.frame': 0 obs. of 1 variable: .. .. .. ..$ labelDescription: chr(0) .. .. ..@ data :'data.frame': 26 obs. of 0 variables .. .. ..@ dimLabels : chr [1:2] "sampleNames" "sampleColumns" .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 1 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. ..@ .Data:List of 4 .. .. .. ..$ : int [1:3] 3 0 0 .. .. .. ..$ : int [1:3] 2 20 0 .. .. .. ..$ : int [1:3] 1 3 0 .. .. .. ..$ : int [1:3] 1 0 0

Source

http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE1145

Examples

data(GSE1145)

Data Set Id: GSE11906

Description

For detailed description visit: http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE11906

Usage

data(GSE11906)

Format

The format is: Formal class 'ExpressionSet' [package "Biobase"] with 7 slots ..@ experimentData :Formal class 'MIAME' [package "Biobase"] with 13 slots .. .. ..@ name : chr "GSE11906" .. .. ..@ lab : chr "" .. .. ..@ contact : chr "" .. .. ..@ title : chr "" .. .. ..@ abstract : chr "" .. .. ..@ url : chr "http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE11906" .. .. ..@ pubMedIds : chr "" .. .. ..@ samples : list() .. .. ..@ hybridizations : list() .. .. ..@ normControls : list() .. .. ..@ preprocessing : list() .. .. ..@ other :List of 3 .. .. .. ..$ design : chr "Not Paired" .. .. .. ..$ targetGeneSets: chr "Pulmonary Disease Chronic Obstructive" .. .. .. ..$ disease : chr "Pulmonary Disease Chronic Obstructive" .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 2 .. .. .. .. .. ..$ : int [1:3] 1 0 0 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ assayData :<environment: 0x3483a70> ..@ phenoData :Formal class 'AnnotatedDataFrame' [package "Biobase"] with 4 slots .. .. ..@ varMetadata :'data.frame': 2 obs. of 1 variable: .. .. .. ..$ labelDescription: chr [1:2] NA NA .. .. ..@ data :'data.frame': 88 obs. of 2 variables: .. .. .. ..$ Sample: chr [1:88] "GSM101095.CEL.gz" "GSM101097.CEL.gz" "GSM252799.CEL.gz" "GSM101098.CEL.gz" ... .. .. .. ..$ Group : chr [1:88] "c" "c" "c" "c" ... .. .. ..@ dimLabels : chr [1:2] "sampleNames" "sampleColumns" .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 1 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ featureData :Formal class 'AnnotatedDataFrame' [package "Biobase"] with 4 slots .. .. ..@ varMetadata :'data.frame': 0 obs. of 1 variable: .. .. .. ..$ labelDescription: chr(0) .. .. ..@ data :'data.frame': 54675 obs. of 0 variables .. .. ..@ dimLabels : chr [1:2] "featureNames" "featureColumns" .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 1 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ annotation : chr "hgu133plus2" ..@ protocolData :Formal class 'AnnotatedDataFrame' [package "Biobase"] with 4 slots .. .. ..@ varMetadata :'data.frame': 0 obs. of 1 variable: .. .. .. ..$ labelDescription: chr(0) .. .. ..@ data :'data.frame': 88 obs. of 0 variables .. .. ..@ dimLabels : chr [1:2] "sampleNames" "sampleColumns" .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 1 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. ..@ .Data:List of 4 .. .. .. ..$ : int [1:3] 3 0 0 .. .. .. ..$ : int [1:3] 2 20 0 .. .. .. ..$ : int [1:3] 1 3 0 .. .. .. ..$ : int [1:3] 1 0 0

Source

http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE11906

Examples

data(GSE11906)

Data Set Id: GSE14924_CD4

Description

For detailed description visit: http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE14924

Usage

data(GSE14924_CD4)

Format

The format is: Formal class 'ExpressionSet' [package "Biobase"] with 7 slots ..@ experimentData :Formal class 'MIAME' [package "Biobase"] with 13 slots .. .. ..@ name : chr "GSE14924_CD4" .. .. ..@ lab : chr "" .. .. ..@ contact : chr "" .. .. ..@ title : chr "" .. .. ..@ abstract : chr "" .. .. ..@ url : chr "http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE14924_CD4" .. .. ..@ pubMedIds : chr "" .. .. ..@ samples : list() .. .. ..@ hybridizations : list() .. .. ..@ normControls : list() .. .. ..@ preprocessing : list() .. .. ..@ other :List of 3 .. .. .. ..$ design : chr "Not Paired" .. .. .. ..$ targetGeneSets: chr "05221" .. .. .. ..$ disease : chr "Acute myeloid leukemia" .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 2 .. .. .. .. .. ..$ : int [1:3] 1 0 0 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ assayData :<environment: 0x347bee0> ..@ phenoData :Formal class 'AnnotatedDataFrame' [package "Biobase"] with 4 slots .. .. ..@ varMetadata :'data.frame': 2 obs. of 1 variable: .. .. .. ..$ labelDescription: chr [1:2] NA NA .. .. ..@ data :'data.frame': 20 obs. of 2 variables: .. .. .. ..$ Sample: chr [1:20] "GSM372721" "GSM372722" "GSM372723" "GSM372724" ... .. .. .. ..$ Group : chr [1:20] "c" "c" "c" "c" ... .. .. ..@ dimLabels : chr [1:2] "sampleNames" "sampleColumns" .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 1 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ featureData :Formal class 'AnnotatedDataFrame' [package "Biobase"] with 4 slots .. .. ..@ varMetadata :'data.frame': 0 obs. of 1 variable: .. .. .. ..$ labelDescription: chr(0) .. .. ..@ data :'data.frame': 54675 obs. of 0 variables .. .. ..@ dimLabels : chr [1:2] "featureNames" "featureColumns" .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 1 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ annotation : chr "hgu133plus2" ..@ protocolData :Formal class 'AnnotatedDataFrame' [package "Biobase"] with 4 slots .. .. ..@ varMetadata :'data.frame': 0 obs. of 1 variable: .. .. .. ..$ labelDescription: chr(0) .. .. ..@ data :'data.frame': 20 obs. of 0 variables .. .. ..@ dimLabels : chr [1:2] "sampleNames" "sampleColumns" .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 1 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. ..@ .Data:List of 4 .. .. .. ..$ : int [1:3] 3 0 0 .. .. .. ..$ : int [1:3] 2 20 0 .. .. .. ..$ : int [1:3] 1 3 0 .. .. .. ..$ : int [1:3] 1 0 0

Source

http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE14924

Examples

data(GSE14924_CD4)

Data Set Id: GSE14924_CD8

Description

For detailed description visit: http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE14924

Usage

data(GSE14924_CD8)

Format

The format is: Formal class 'ExpressionSet' [package "Biobase"] with 7 slots ..@ experimentData :Formal class 'MIAME' [package "Biobase"] with 13 slots .. .. ..@ name : chr "GSE14924_CD8" .. .. ..@ lab : chr "" .. .. ..@ contact : chr "" .. .. ..@ title : chr "" .. .. ..@ abstract : chr "" .. .. ..@ url : chr "http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE14924_CD8" .. .. ..@ pubMedIds : chr "" .. .. ..@ samples : list() .. .. ..@ hybridizations : list() .. .. ..@ normControls : list() .. .. ..@ preprocessing : list() .. .. ..@ other :List of 3 .. .. .. ..$ design : chr "Not Paired" .. .. .. ..$ targetGeneSets: chr "05221" .. .. .. ..$ disease : chr "Acute myeloid leukemia" .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 2 .. .. .. .. .. ..$ : int [1:3] 1 0 0 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ assayData :<environment: 0x3474e00> ..@ phenoData :Formal class 'AnnotatedDataFrame' [package "Biobase"] with 4 slots .. .. ..@ varMetadata :'data.frame': 2 obs. of 1 variable: .. .. .. ..$ labelDescription: chr [1:2] NA NA .. .. ..@ data :'data.frame': 21 obs. of 2 variables: .. .. .. ..$ Sample: chr [1:21] "GSM372731" "GSM372732" "GSM372733" "GSM372734" ... .. .. .. ..$ Group : chr [1:21] "c" "c" "c" "c" ... .. .. ..@ dimLabels : chr [1:2] "sampleNames" "sampleColumns" .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 1 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ featureData :Formal class 'AnnotatedDataFrame' [package "Biobase"] with 4 slots .. .. ..@ varMetadata :'data.frame': 0 obs. of 1 variable: .. .. .. ..$ labelDescription: chr(0) .. .. ..@ data :'data.frame': 54675 obs. of 0 variables .. .. ..@ dimLabels : chr [1:2] "featureNames" "featureColumns" .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 1 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ annotation : chr "hgu133plus2" ..@ protocolData :Formal class 'AnnotatedDataFrame' [package "Biobase"] with 4 slots .. .. ..@ varMetadata :'data.frame': 0 obs. of 1 variable: .. .. .. ..$ labelDescription: chr(0) .. .. ..@ data :'data.frame': 21 obs. of 0 variables .. .. ..@ dimLabels : chr [1:2] "sampleNames" "sampleColumns" .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 1 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. ..@ .Data:List of 4 .. .. .. ..$ : int [1:3] 3 0 0 .. .. .. ..$ : int [1:3] 2 20 0 .. .. .. ..$ : int [1:3] 1 3 0 .. .. .. ..$ : int [1:3] 1 0 0

Source

http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE14924

Examples

data(GSE14924_CD8)

Data Set Id: GSE16759

Description

For detailed description visit: http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE16759

Usage

data(GSE16759)

Format

The format is: Formal class 'ExpressionSet' [package "Biobase"] with 7 slots ..@ experimentData :Formal class 'MIAME' [package "Biobase"] with 13 slots .. .. ..@ name : chr "GSE16759" .. .. ..@ lab : chr "" .. .. ..@ contact : chr "" .. .. ..@ title : chr "" .. .. ..@ abstract : chr "" .. .. ..@ url : chr "http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE16759" .. .. ..@ pubMedIds : chr "" .. .. ..@ samples : list() .. .. ..@ hybridizations : list() .. .. ..@ normControls : list() .. .. ..@ preprocessing : list() .. .. ..@ other :List of 3 .. .. .. ..$ design : chr "Not Paired" .. .. .. ..$ targetGeneSets: chr "05010" .. .. .. ..$ disease : chr "Alzheimer's disease" .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 2 .. .. .. .. .. ..$ : int [1:3] 1 0 0 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ assayData :<environment: 0x3472060> ..@ phenoData :Formal class 'AnnotatedDataFrame' [package "Biobase"] with 4 slots .. .. ..@ varMetadata :'data.frame': 2 obs. of 1 variable: .. .. .. ..$ labelDescription: chr [1:2] NA NA .. .. ..@ data :'data.frame': 8 obs. of 2 variables: .. .. .. ..$ Sample: chr [1:8] "GSM420149" "GSM420150" "GSM420151" "GSM420152" ... .. .. .. ..$ Group : chr [1:8] "c" "c" "c" "c" ... .. .. ..@ dimLabels : chr [1:2] "sampleNames" "sampleColumns" .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 1 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ featureData :Formal class 'AnnotatedDataFrame' [package "Biobase"] with 4 slots .. .. ..@ varMetadata :'data.frame': 0 obs. of 1 variable: .. .. .. ..$ labelDescription: chr(0) .. .. ..@ data :'data.frame': 54675 obs. of 0 variables .. .. ..@ dimLabels : chr [1:2] "featureNames" "featureColumns" .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 1 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ annotation : chr "hgu133plus2" ..@ protocolData :Formal class 'AnnotatedDataFrame' [package "Biobase"] with 4 slots .. .. ..@ varMetadata :'data.frame': 0 obs. of 1 variable: .. .. .. ..$ labelDescription: chr(0) .. .. ..@ data :'data.frame': 8 obs. of 0 variables .. .. ..@ dimLabels : chr [1:2] "sampleNames" "sampleColumns" .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 1 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. ..@ .Data:List of 4 .. .. .. ..$ : int [1:3] 3 0 0 .. .. .. ..$ : int [1:3] 2 20 0 .. .. .. ..$ : int [1:3] 1 3 0 .. .. .. ..$ : int [1:3] 1 0 0

Source

http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE16759

Examples

data(GSE16759)

Data Set Id: GSE19420

Description

For detailed description visit: http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE19420

Usage

data(GSE19420)

Format

The format is: Formal class 'ExpressionSet' [package "Biobase"] with 7 slots ..@ experimentData :Formal class 'MIAME' [package "Biobase"] with 13 slots .. .. ..@ name : chr "GSE19420" .. .. ..@ lab : chr "" .. .. ..@ contact : chr "" .. .. ..@ title : chr "" .. .. ..@ abstract : chr "" .. .. ..@ url : chr "http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE19420" .. .. ..@ pubMedIds : chr "" .. .. ..@ samples : list() .. .. ..@ hybridizations : list() .. .. ..@ normControls : list() .. .. ..@ preprocessing : list() .. .. ..@ other :List of 3 .. .. .. ..$ design : chr "Not Paired" .. .. .. ..$ targetGeneSets: chr "Diabetes Mellitus Type2" .. .. .. ..$ disease : chr "Diabetes Mellitus Type2" .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 2 .. .. .. .. .. ..$ : int [1:3] 1 0 0 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ assayData :<environment: 0x3472418> ..@ phenoData :Formal class 'AnnotatedDataFrame' [package "Biobase"] with 4 slots .. .. ..@ varMetadata :'data.frame': 2 obs. of 1 variable: .. .. .. ..$ labelDescription: chr [1:2] NA NA .. .. ..@ data :'data.frame': 24 obs. of 2 variables: .. .. .. ..$ Sample: chr [1:24] "GSM482934" "GSM482938" "GSM482945" "GSM482947" ... .. .. .. ..$ Group : chr [1:24] "c" "c" "c" "c" ... .. .. ..@ dimLabels : chr [1:2] "sampleNames" "sampleColumns" .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 1 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ featureData :Formal class 'AnnotatedDataFrame' [package "Biobase"] with 4 slots .. .. ..@ varMetadata :'data.frame': 0 obs. of 1 variable: .. .. .. ..$ labelDescription: chr(0) .. .. ..@ data :'data.frame': 54675 obs. of 0 variables .. .. ..@ dimLabels : chr [1:2] "featureNames" "featureColumns" .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 1 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ annotation : chr "hgu133plus2" ..@ protocolData :Formal class 'AnnotatedDataFrame' [package "Biobase"] with 4 slots .. .. ..@ varMetadata :'data.frame': 0 obs. of 1 variable: .. .. .. ..$ labelDescription: chr(0) .. .. ..@ data :'data.frame': 24 obs. of 0 variables .. .. ..@ dimLabels : chr [1:2] "sampleNames" "sampleColumns" .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 1 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. ..@ .Data:List of 4 .. .. .. ..$ : int [1:3] 3 0 0 .. .. .. ..$ : int [1:3] 2 20 0 .. .. .. ..$ : int [1:3] 1 3 0 .. .. .. ..$ : int [1:3] 1 0 0

Source

http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE19420

Examples

data(GSE19420)

Data Set Id: GSE20164

Description

For detailed description visit: http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE20164

Usage

data(GSE20164)

Format

The format is: Formal class 'ExpressionSet' [package "Biobase"] with 7 slots ..@ experimentData :Formal class 'MIAME' [package "Biobase"] with 13 slots .. .. ..@ name : chr "GSE20164" .. .. ..@ lab : chr "" .. .. ..@ contact : chr "" .. .. ..@ title : chr "" .. .. ..@ abstract : chr "" .. .. ..@ url : chr "http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE20164" .. .. ..@ pubMedIds : chr "" .. .. ..@ samples : list() .. .. ..@ hybridizations : list() .. .. ..@ normControls : list() .. .. ..@ preprocessing : list() .. .. ..@ other :List of 3 .. .. .. ..$ design : chr "Not Paired" .. .. .. ..$ targetGeneSets: chr "Parkinson disease" .. .. .. ..$ disease : chr "Parkinson disease" .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 2 .. .. .. .. .. ..$ : int [1:3] 1 0 0 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ assayData :<environment: 0x346d510> ..@ phenoData :Formal class 'AnnotatedDataFrame' [package "Biobase"] with 4 slots .. .. ..@ varMetadata :'data.frame': 2 obs. of 1 variable: .. .. .. ..$ labelDescription: chr [1:2] NA NA .. .. ..@ data :'data.frame': 11 obs. of 2 variables: .. .. .. ..$ Sample: chr [1:11] "GSM506013" "GSM506014" "GSM506019" "GSM506020" ... .. .. .. ..$ Group : chr [1:11] "c" "c" "c" "c" ... .. .. ..@ dimLabels : chr [1:2] "sampleNames" "sampleColumns" .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 1 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ featureData :Formal class 'AnnotatedDataFrame' [package "Biobase"] with 4 slots .. .. ..@ varMetadata :'data.frame': 0 obs. of 1 variable: .. .. .. ..$ labelDescription: chr(0) .. .. ..@ data :'data.frame': 22283 obs. of 0 variables .. .. ..@ dimLabels : chr [1:2] "featureNames" "featureColumns" .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 1 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ annotation : chr "hgu133a" ..@ protocolData :Formal class 'AnnotatedDataFrame' [package "Biobase"] with 4 slots .. .. ..@ varMetadata :'data.frame': 0 obs. of 1 variable: .. .. .. ..$ labelDescription: chr(0) .. .. ..@ data :'data.frame': 11 obs. of 0 variables .. .. ..@ dimLabels : chr [1:2] "sampleNames" "sampleColumns" .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 1 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. ..@ .Data:List of 4 .. .. .. ..$ : int [1:3] 3 0 0 .. .. .. ..$ : int [1:3] 2 20 0 .. .. .. ..$ : int [1:3] 1 3 0 .. .. .. ..$ : int [1:3] 1 0 0

Source

http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE20164

Examples

data(GSE20164)

Data Set Id: GSE22780

Description

For detailed description visit: http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE22780

Usage

data(GSE22780)

Format

The format is: Formal class 'ExpressionSet' [package "Biobase"] with 7 slots ..@ experimentData :Formal class 'MIAME' [package "Biobase"] with 13 slots .. .. ..@ name : chr "GSE22780" .. .. ..@ lab : chr "" .. .. ..@ contact : chr "" .. .. ..@ title : chr "" .. .. ..@ abstract : chr "" .. .. ..@ url : chr "http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE22780" .. .. ..@ pubMedIds : chr "" .. .. ..@ samples : list() .. .. ..@ hybridizations : list() .. .. ..@ normControls : list() .. .. ..@ preprocessing : list() .. .. ..@ other :List of 3 .. .. .. ..$ design : chr "Paired" .. .. .. ..$ targetGeneSets: chr "Pancreatic Neoplasms" .. .. .. ..$ disease : chr "Pancreatic Neoplasms" .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 2 .. .. .. .. .. ..$ : int [1:3] 1 0 0 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ assayData :<environment: 0x33b93f0> ..@ phenoData :Formal class 'AnnotatedDataFrame' [package "Biobase"] with 4 slots .. .. ..@ varMetadata :'data.frame': 3 obs. of 1 variable: .. .. .. ..$ labelDescription: chr [1:3] NA NA NA .. .. ..@ data :'data.frame': 16 obs. of 3 variables: .. .. .. ..$ Sample: chr [1:16] "GSM563305" "GSM563307" "GSM563309" "GSM563311" ... .. .. .. ..$ Group : chr [1:16] "c" "c" "c" "c" ... .. .. .. ..$ Block : chr [1:16] "1" "2" "3" "4" ... .. .. ..@ dimLabels : chr [1:2] "sampleNames" "sampleColumns" .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 1 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ featureData :Formal class 'AnnotatedDataFrame' [package "Biobase"] with 4 slots .. .. ..@ varMetadata :'data.frame': 0 obs. of 1 variable: .. .. .. ..$ labelDescription: chr(0) .. .. ..@ data :'data.frame': 54675 obs. of 0 variables .. .. ..@ dimLabels : chr [1:2] "featureNames" "featureColumns" .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 1 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ annotation : chr "hgu133plus2" ..@ protocolData :Formal class 'AnnotatedDataFrame' [package "Biobase"] with 4 slots .. .. ..@ varMetadata :'data.frame': 0 obs. of 1 variable: .. .. .. ..$ labelDescription: chr(0) .. .. ..@ data :'data.frame': 16 obs. of 0 variables .. .. ..@ dimLabels : chr [1:2] "sampleNames" "sampleColumns" .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 1 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. ..@ .Data:List of 4 .. .. .. ..$ : int [1:3] 3 0 0 .. .. .. ..$ : int [1:3] 2 20 0 .. .. .. ..$ : int [1:3] 1 3 0 .. .. .. ..$ : int [1:3] 1 0 0

Source

http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE22780

Examples

data(GSE22780)

Data Set Id: GSE23878

Description

For detailed description visit: http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE23878

Usage

data(GSE23878)

Format

The format is: Formal class 'ExpressionSet' [package "Biobase"] with 7 slots ..@ experimentData :Formal class 'MIAME' [package "Biobase"] with 13 slots .. .. ..@ name : chr "GSE23878" .. .. ..@ lab : chr "" .. .. ..@ contact : chr "" .. .. ..@ title : chr "" .. .. ..@ abstract : chr "" .. .. ..@ url : chr "http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE23878" .. .. ..@ pubMedIds : chr "" .. .. ..@ samples : list() .. .. ..@ hybridizations : list() .. .. ..@ normControls : list() .. .. ..@ preprocessing : list() .. .. ..@ other :List of 3 .. .. .. ..$ design : chr "Paired" .. .. .. ..$ targetGeneSets: chr "05210" .. .. .. ..$ disease : chr "Colorectal cancer" .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 2 .. .. .. .. .. ..$ : int [1:3] 1 0 0 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ assayData :<environment: 0x3466988> ..@ phenoData :Formal class 'AnnotatedDataFrame' [package "Biobase"] with 4 slots .. .. ..@ varMetadata :'data.frame': 3 obs. of 1 variable: .. .. .. ..$ labelDescription: chr [1:3] NA NA NA .. .. ..@ data :'data.frame': 38 obs. of 3 variables: .. .. .. ..$ Sample: chr [1:38] "GSM588863" "GSM588864" "GSM588865" "GSM588867" ... .. .. .. ..$ Group : chr [1:38] "c" "c" "c" "c" ... .. .. .. ..$ Block : chr [1:38] "2" "3" "8" "11" ... .. .. ..@ dimLabels : chr [1:2] "sampleNames" "sampleColumns" .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 1 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ featureData :Formal class 'AnnotatedDataFrame' [package "Biobase"] with 4 slots .. .. ..@ varMetadata :'data.frame': 0 obs. of 1 variable: .. .. .. ..$ labelDescription: chr(0) .. .. ..@ data :'data.frame': 54675 obs. of 0 variables .. .. ..@ dimLabels : chr [1:2] "featureNames" "featureColumns" .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 1 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ annotation : chr "hgu133plus2" ..@ protocolData :Formal class 'AnnotatedDataFrame' [package "Biobase"] with 4 slots .. .. ..@ varMetadata :'data.frame': 0 obs. of 1 variable: .. .. .. ..$ labelDescription: chr(0) .. .. ..@ data :'data.frame': 38 obs. of 0 variables .. .. ..@ dimLabels : chr [1:2] "sampleNames" "sampleColumns" .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 1 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. ..@ .Data:List of 4 .. .. .. ..$ : int [1:3] 3 0 0 .. .. .. ..$ : int [1:3] 2 20 0 .. .. .. ..$ : int [1:3] 1 3 0 .. .. .. ..$ : int [1:3] 1 0 0

Source

http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE23878

Examples

data(GSE23878)

Data Set Id: GSE24739_G0

Description

For detailed description visit: http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE24739

Usage

data(GSE24739_G0)

Format

The format is: Formal class 'ExpressionSet' [package "Biobase"] with 7 slots ..@ experimentData :Formal class 'MIAME' [package "Biobase"] with 13 slots .. .. ..@ name : chr "GSE24739_G0" .. .. ..@ lab : chr "" .. .. ..@ contact : chr "" .. .. ..@ title : chr "" .. .. ..@ abstract : chr "" .. .. ..@ url : chr "http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE24739_G0" .. .. ..@ pubMedIds : chr "" .. .. ..@ samples : list() .. .. ..@ hybridizations : list() .. .. ..@ normControls : list() .. .. ..@ preprocessing : list() .. .. ..@ other :List of 3 .. .. .. ..$ design : chr "Not Paired" .. .. .. ..$ targetGeneSets: chr "05220" .. .. .. ..$ disease : chr "Chronic myeloid leukemia" .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 2 .. .. .. .. .. ..$ : int [1:3] 1 0 0 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ assayData :<environment: 0x34626d8> ..@ phenoData :Formal class 'AnnotatedDataFrame' [package "Biobase"] with 4 slots .. .. ..@ varMetadata :'data.frame': 2 obs. of 1 variable: .. .. .. ..$ labelDescription: chr [1:2] NA NA .. .. ..@ data :'data.frame': 12 obs. of 2 variables: .. .. .. ..$ Sample: chr [1:12] "GSM609354" "GSM609355" "GSM609356" "GSM609357" ... .. .. .. ..$ Group : chr [1:12] "c" "c" "c" "c" ... .. .. ..@ dimLabels : chr [1:2] "sampleNames" "sampleColumns" .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 1 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ featureData :Formal class 'AnnotatedDataFrame' [package "Biobase"] with 4 slots .. .. ..@ varMetadata :'data.frame': 0 obs. of 1 variable: .. .. .. ..$ labelDescription: chr(0) .. .. ..@ data :'data.frame': 54613 obs. of 0 variables .. .. ..@ dimLabels : chr [1:2] "featureNames" "featureColumns" .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 1 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ annotation : chr "hgu133plus2" ..@ protocolData :Formal class 'AnnotatedDataFrame' [package "Biobase"] with 4 slots .. .. ..@ varMetadata :'data.frame': 0 obs. of 1 variable: .. .. .. ..$ labelDescription: chr(0) .. .. ..@ data :'data.frame': 12 obs. of 0 variables .. .. ..@ dimLabels : chr [1:2] "sampleNames" "sampleColumns" .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 1 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. ..@ .Data:List of 4 .. .. .. ..$ : int [1:3] 3 0 0 .. .. .. ..$ : int [1:3] 2 20 0 .. .. .. ..$ : int [1:3] 1 3 0 .. .. .. ..$ : int [1:3] 1 0 0

Source

http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE24739

Examples

data(GSE24739_G0)

Data Set Id: GSE24739_G1

Description

For detailed description visit: http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE24739

Usage

data(GSE24739_G1)

Format

The format is: Formal class 'ExpressionSet' [package "Biobase"] with 7 slots ..@ experimentData :Formal class 'MIAME' [package "Biobase"] with 13 slots .. .. ..@ name : chr "GSE24739_G1" .. .. ..@ lab : chr "" .. .. ..@ contact : chr "" .. .. ..@ title : chr "" .. .. ..@ abstract : chr "" .. .. ..@ url : chr "http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE24739_G1" .. .. ..@ pubMedIds : chr "" .. .. ..@ samples : list() .. .. ..@ hybridizations : list() .. .. ..@ normControls : list() .. .. ..@ preprocessing : list() .. .. ..@ other :List of 3 .. .. .. ..$ design : chr "Not Paired" .. .. .. ..$ targetGeneSets: chr "05220" .. .. .. ..$ disease : chr "Chronic myeloid leukemia" .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 2 .. .. .. .. .. ..$ : int [1:3] 1 0 0 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ assayData :<environment: 0x3460810> ..@ phenoData :Formal class 'AnnotatedDataFrame' [package "Biobase"] with 4 slots .. .. ..@ varMetadata :'data.frame': 2 obs. of 1 variable: .. .. .. ..$ labelDescription: chr [1:2] NA NA .. .. ..@ data :'data.frame': 12 obs. of 2 variables: .. .. .. ..$ Sample: chr [1:12] "GSM609366" "GSM609367" "GSM609368" "GSM609369" ... .. .. .. ..$ Group : chr [1:12] "c" "c" "c" "c" ... .. .. ..@ dimLabels : chr [1:2] "sampleNames" "sampleColumns" .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 1 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ featureData :Formal class 'AnnotatedDataFrame' [package "Biobase"] with 4 slots .. .. ..@ varMetadata :'data.frame': 0 obs. of 1 variable: .. .. .. ..$ labelDescription: chr(0) .. .. ..@ data :'data.frame': 54613 obs. of 0 variables .. .. ..@ dimLabels : chr [1:2] "featureNames" "featureColumns" .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 1 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ annotation : chr "hgu133plus2" ..@ protocolData :Formal class 'AnnotatedDataFrame' [package "Biobase"] with 4 slots .. .. ..@ varMetadata :'data.frame': 0 obs. of 1 variable: .. .. .. ..$ labelDescription: chr(0) .. .. ..@ data :'data.frame': 12 obs. of 0 variables .. .. ..@ dimLabels : chr [1:2] "sampleNames" "sampleColumns" .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 1 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. ..@ .Data:List of 4 .. .. .. ..$ : int [1:3] 3 0 0 .. .. .. ..$ : int [1:3] 2 20 0 .. .. .. ..$ : int [1:3] 1 3 0 .. .. .. ..$ : int [1:3] 1 0 0

Source

http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE24739

Examples

data(GSE24739_G1)

Data Set Id: GSE30153

Description

For detailed description visit: http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE30153

Usage

data(GSE30153)

Format

The format is: Formal class 'ExpressionSet' [package "Biobase"] with 7 slots ..@ experimentData :Formal class 'MIAME' [package "Biobase"] with 13 slots .. .. ..@ name : chr "GSE30153" .. .. ..@ lab : chr "" .. .. ..@ contact : chr "" .. .. ..@ title : chr "" .. .. ..@ abstract : chr "" .. .. ..@ url : chr "http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE30153" .. .. ..@ pubMedIds : chr "" .. .. ..@ samples : list() .. .. ..@ hybridizations : list() .. .. ..@ normControls : list() .. .. ..@ preprocessing : list() .. .. ..@ other :List of 3 .. .. .. ..$ design : chr "Not Paired" .. .. .. ..$ targetGeneSets: chr "Lupus Erythematosus Systemic" .. .. .. ..$ disease : chr "Lupus Erythematosus Systemic" .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 2 .. .. .. .. .. ..$ : int [1:3] 1 0 0 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ assayData :<environment: 0x345d438> ..@ phenoData :Formal class 'AnnotatedDataFrame' [package "Biobase"] with 4 slots .. .. ..@ varMetadata :'data.frame': 2 obs. of 1 variable: .. .. .. ..$ labelDescription: chr [1:2] NA NA .. .. ..@ data :'data.frame': 26 obs. of 2 variables: .. .. .. ..$ Sample: chr [1:26] "GSM746743" "GSM746744" "GSM746745" "GSM746746" ... .. .. .. ..$ Group : chr [1:26] "c" "c" "c" "c" ... .. .. ..@ dimLabels : chr [1:2] "sampleNames" "sampleColumns" .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 1 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ featureData :Formal class 'AnnotatedDataFrame' [package "Biobase"] with 4 slots .. .. ..@ varMetadata :'data.frame': 0 obs. of 1 variable: .. .. .. ..$ labelDescription: chr(0) .. .. ..@ data :'data.frame': 34853 obs. of 0 variables .. .. ..@ dimLabels : chr [1:2] "featureNames" "featureColumns" .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 1 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ annotation : chr "hgu133plus2" ..@ protocolData :Formal class 'AnnotatedDataFrame' [package "Biobase"] with 4 slots .. .. ..@ varMetadata :'data.frame': 0 obs. of 1 variable: .. .. .. ..$ labelDescription: chr(0) .. .. ..@ data :'data.frame': 26 obs. of 0 variables .. .. ..@ dimLabels : chr [1:2] "sampleNames" "sampleColumns" .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 1 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. ..@ .Data:List of 4 .. .. .. ..$ : int [1:3] 3 0 0 .. .. .. ..$ : int [1:3] 2 20 0 .. .. .. ..$ : int [1:3] 1 3 0 .. .. .. ..$ : int [1:3] 1 0 0

Source

http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE30153

Examples

data(GSE30153)

Data Set Id: GSE32676

Description

For detailed description visit: http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE32676

Usage

data(GSE32676)

Format

The format is: Formal class 'ExpressionSet' [package "Biobase"] with 7 slots ..@ experimentData :Formal class 'MIAME' [package "Biobase"] with 13 slots .. .. ..@ name : chr "GSE32676" .. .. ..@ lab : chr "" .. .. ..@ contact : chr "" .. .. ..@ title : chr "" .. .. ..@ abstract : chr "" .. .. ..@ url : chr "http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE32676" .. .. ..@ pubMedIds : chr "" .. .. ..@ samples : list() .. .. ..@ hybridizations : list() .. .. ..@ normControls : list() .. .. ..@ preprocessing : list() .. .. ..@ other :List of 3 .. .. .. ..$ design : chr "Not Paired" .. .. .. ..$ targetGeneSets: chr "05212" .. .. .. ..$ disease : chr "Pancreatic cancer" .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 2 .. .. .. .. .. ..$ : int [1:3] 1 0 0 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ assayData :<environment: 0x3456c68> ..@ phenoData :Formal class 'AnnotatedDataFrame' [package "Biobase"] with 4 slots .. .. ..@ varMetadata :'data.frame': 2 obs. of 1 variable: .. .. .. ..$ labelDescription: chr [1:2] NA NA .. .. ..@ data :'data.frame': 32 obs. of 2 variables: .. .. .. ..$ Sample: chr [1:32] "GSM811029" "GSM811030" "GSM811031" "GSM811032" ... .. .. .. ..$ Group : chr [1:32] "c" "c" "c" "c" ... .. .. ..@ dimLabels : chr [1:2] "sampleNames" "sampleColumns" .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 1 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ featureData :Formal class 'AnnotatedDataFrame' [package "Biobase"] with 4 slots .. .. ..@ varMetadata :'data.frame': 0 obs. of 1 variable: .. .. .. ..$ labelDescription: chr(0) .. .. ..@ data :'data.frame': 54675 obs. of 0 variables .. .. ..@ dimLabels : chr [1:2] "featureNames" "featureColumns" .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 1 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ annotation : chr "hgu133plus2" ..@ protocolData :Formal class 'AnnotatedDataFrame' [package "Biobase"] with 4 slots .. .. ..@ varMetadata :'data.frame': 0 obs. of 1 variable: .. .. .. ..$ labelDescription: chr(0) .. .. ..@ data :'data.frame': 32 obs. of 0 variables .. .. ..@ dimLabels : chr [1:2] "sampleNames" "sampleColumns" .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 1 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. ..@ .Data:List of 4 .. .. .. ..$ : int [1:3] 3 0 0 .. .. .. ..$ : int [1:3] 2 20 0 .. .. .. ..$ : int [1:3] 1 3 0 .. .. .. ..$ : int [1:3] 1 0 0

Source

http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE32676

Examples

data(GSE32676)

Data Set Id: GSE38666_epithelia

Description

For detailed description visit: http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE38666

Usage

data(GSE38666_epithelia)

Format

The format is: Formal class 'ExpressionSet' [package "Biobase"] with 7 slots ..@ experimentData :Formal class 'MIAME' [package "Biobase"] with 13 slots .. .. ..@ name : chr "GSE38666_epithelia" .. .. ..@ lab : chr "" .. .. ..@ contact : chr "" .. .. ..@ title : chr "" .. .. ..@ abstract : chr "" .. .. ..@ url : chr "http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE38666" .. .. ..@ pubMedIds : chr "" .. .. ..@ samples : list() .. .. ..@ hybridizations : list() .. .. ..@ normControls : list() .. .. ..@ preprocessing : list() .. .. ..@ other :List of 3 .. .. .. ..$ design : chr "Not Paired" .. .. .. ..$ targetGeneSets: chr "Ovarian Neoplasms1" .. .. .. ..$ disease : chr "Ovarian Neoplasms1" .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 2 .. .. .. .. .. ..$ : int [1:3] 1 0 0 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ assayData :<environment: 0x3452868> ..@ phenoData :Formal class 'AnnotatedDataFrame' [package "Biobase"] with 4 slots .. .. ..@ varMetadata :'data.frame': 2 obs. of 1 variable: .. .. .. ..$ labelDescription: chr [1:2] NA NA .. .. ..@ data :'data.frame': 30 obs. of 2 variables: .. .. .. ..$ Sample: chr [1:30] "GSM947277" "GSM947278" "GSM947279" "GSM947280" ... .. .. .. ..$ Group : chr [1:30] "c" "c" "c" "c" ... .. .. ..@ dimLabels : chr [1:2] "sampleNames" "sampleColumns" .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 1 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ featureData :Formal class 'AnnotatedDataFrame' [package "Biobase"] with 4 slots .. .. ..@ varMetadata :'data.frame': 0 obs. of 1 variable: .. .. .. ..$ labelDescription: chr(0) .. .. ..@ data :'data.frame': 54675 obs. of 0 variables .. .. ..@ dimLabels : chr [1:2] "featureNames" "featureColumns" .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 1 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ annotation : chr "hgu133plus2" ..@ protocolData :Formal class 'AnnotatedDataFrame' [package "Biobase"] with 4 slots .. .. ..@ varMetadata :'data.frame': 0 obs. of 1 variable: .. .. .. ..$ labelDescription: chr(0) .. .. ..@ data :'data.frame': 30 obs. of 0 variables .. .. ..@ dimLabels : chr [1:2] "sampleNames" "sampleColumns" .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 1 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. ..@ .Data:List of 4 .. .. .. ..$ : int [1:3] 3 0 0 .. .. .. ..$ : int [1:3] 2 20 0 .. .. .. ..$ : int [1:3] 1 3 0 .. .. .. ..$ : int [1:3] 1 0 0

Source

http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE38666

Examples

data(GSE38666_epithelia)

Data Set Id: GSE38666_stroma

Description

For detailed description visit: http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE38666

Usage

data(GSE38666_stroma)

Format

The format is: Formal class 'ExpressionSet' [package "Biobase"] with 7 slots ..@ experimentData :Formal class 'MIAME' [package "Biobase"] with 13 slots .. .. ..@ name : chr "GSE38666_stroma" .. .. ..@ lab : chr "" .. .. ..@ contact : chr "" .. .. ..@ title : chr "" .. .. ..@ abstract : chr "" .. .. ..@ url : chr "http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE38666_epithelia" .. .. ..@ pubMedIds : chr "" .. .. ..@ samples : list() .. .. ..@ hybridizations : list() .. .. ..@ normControls : list() .. .. ..@ preprocessing : list() .. .. ..@ other :List of 3 .. .. .. ..$ design : chr "Not Paired" .. .. .. ..$ targetGeneSets: chr "Ovarian Neoplasms1" .. .. .. ..$ disease : chr "Ovarian Neoplasms1" .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 2 .. .. .. .. .. ..$ : int [1:3] 1 0 0 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ assayData :<environment: 0x33ff060> ..@ phenoData :Formal class 'AnnotatedDataFrame' [package "Biobase"] with 4 slots .. .. ..@ varMetadata :'data.frame': 2 obs. of 1 variable: .. .. .. ..$ labelDescription: chr [1:2] NA NA .. .. ..@ data :'data.frame': 15 obs. of 2 variables: .. .. .. ..$ Sample: chr [1:15] "GSM947269" "GSM947270" "GSM947271" "GSM947272" ... .. .. .. ..$ Group : chr [1:15] "c" "c" "c" "c" ... .. .. ..@ dimLabels : chr [1:2] "sampleNames" "sampleColumns" .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 1 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ featureData :Formal class 'AnnotatedDataFrame' [package "Biobase"] with 4 slots .. .. ..@ varMetadata :'data.frame': 0 obs. of 1 variable: .. .. .. ..$ labelDescription: chr(0) .. .. ..@ data :'data.frame': 54675 obs. of 0 variables .. .. ..@ dimLabels : chr [1:2] "featureNames" "featureColumns" .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 1 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ annotation : chr "hgu133plus2" ..@ protocolData :Formal class 'AnnotatedDataFrame' [package "Biobase"] with 4 slots .. .. ..@ varMetadata :'data.frame': 0 obs. of 1 variable: .. .. .. ..$ labelDescription: chr(0) .. .. ..@ data :'data.frame': 15 obs. of 0 variables .. .. ..@ dimLabels : chr [1:2] "sampleNames" "sampleColumns" .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 1 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. ..@ .Data:List of 4 .. .. .. ..$ : int [1:3] 3 0 0 .. .. .. ..$ : int [1:3] 2 20 0 .. .. .. ..$ : int [1:3] 1 3 0 .. .. .. ..$ : int [1:3] 1 0 0

Source

http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE38666

Examples

data(GSE38666_stroma)

Data Set Id: GSE4183

Description

For detailed description visit: http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE4183

Usage

data(GSE4183)

Format

The format is: Formal class 'ExpressionSet' [package "Biobase"] with 7 slots ..@ experimentData :Formal class 'MIAME' [package "Biobase"] with 13 slots .. .. ..@ name : chr "GSE4183" .. .. ..@ lab : chr "" .. .. ..@ contact : chr "" .. .. ..@ title : chr "" .. .. ..@ abstract : chr "" .. .. ..@ url : chr "http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE4183" .. .. ..@ pubMedIds : chr "" .. .. ..@ samples : list() .. .. ..@ hybridizations : list() .. .. ..@ normControls : list() .. .. ..@ preprocessing : list() .. .. ..@ other :List of 3 .. .. .. ..$ design : chr "Not Paired" .. .. .. ..$ targetGeneSets: chr "05210" .. .. .. ..$ disease : chr "Colorectal cancer" .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 2 .. .. .. .. .. ..$ : int [1:3] 1 0 0 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ assayData :<environment: 0x33fff38> ..@ phenoData :Formal class 'AnnotatedDataFrame' [package "Biobase"] with 4 slots .. .. ..@ varMetadata :'data.frame': 2 obs. of 1 variable: .. .. .. ..$ labelDescription: chr [1:2] NA NA .. .. ..@ data :'data.frame': 23 obs. of 2 variables: .. .. .. ..$ Sample: chr [1:23] "GSM95473" "GSM95474" "GSM95475" "GSM95476" ... .. .. .. ..$ Group : chr [1:23] "c" "c" "c" "c" ... .. .. ..@ dimLabels : chr [1:2] "sampleNames" "sampleColumns" .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 1 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ featureData :Formal class 'AnnotatedDataFrame' [package "Biobase"] with 4 slots .. .. ..@ varMetadata :'data.frame': 0 obs. of 1 variable: .. .. .. ..$ labelDescription: chr(0) .. .. ..@ data :'data.frame': 54675 obs. of 0 variables .. .. ..@ dimLabels : chr [1:2] "featureNames" "featureColumns" .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 1 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ annotation : chr "hgu133plus2" ..@ protocolData :Formal class 'AnnotatedDataFrame' [package "Biobase"] with 4 slots .. .. ..@ varMetadata :'data.frame': 0 obs. of 1 variable: .. .. .. ..$ labelDescription: chr(0) .. .. ..@ data :'data.frame': 23 obs. of 0 variables .. .. ..@ dimLabels : chr [1:2] "sampleNames" "sampleColumns" .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 1 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. ..@ .Data:List of 4 .. .. .. ..$ : int [1:3] 3 0 0 .. .. .. ..$ : int [1:3] 2 20 0 .. .. .. ..$ : int [1:3] 1 3 0 .. .. .. ..$ : int [1:3] 1 0 0

Source

http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE4183

Examples

data(GSE4183)

Data Set Id: GSE42057

Description

For detailed description visit: http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE42057

Usage

data(GSE42057)

Format

The format is: Formal class 'ExpressionSet' [package "Biobase"] with 7 slots ..@ experimentData :Formal class 'MIAME' [package "Biobase"] with 13 slots .. .. ..@ name : chr "GSE42057" .. .. ..@ lab : chr "" .. .. ..@ contact : chr "" .. .. ..@ title : chr "" .. .. ..@ abstract : chr "" .. .. ..@ url : chr "http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE42057" .. .. ..@ pubMedIds : chr "" .. .. ..@ samples : list() .. .. ..@ hybridizations : list() .. .. ..@ normControls : list() .. .. ..@ preprocessing : list() .. .. ..@ other :List of 3 .. .. .. ..$ design : chr "Not Paired" .. .. .. ..$ targetGeneSets: chr "Pulmonary Disease Chronic Obstructive" .. .. .. ..$ disease : chr "Pulmonary Disease Chronic Obstructive" .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 2 .. .. .. .. .. ..$ : int [1:3] 1 0 0 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ assayData :<environment: 0x33eca48> ..@ phenoData :Formal class 'AnnotatedDataFrame' [package "Biobase"] with 4 slots .. .. ..@ varMetadata :'data.frame': 2 obs. of 1 variable: .. .. .. ..$ labelDescription: chr [1:2] NA NA .. .. ..@ data :'data.frame': 136 obs. of 2 variables: .. .. .. ..$ Sample: chr [1:136] "GSM1031553" "GSM1031554" "GSM1031555" "GSM1031564" ... .. .. .. ..$ Group : chr [1:136] "c" "c" "c" "c" ... .. .. ..@ dimLabels : chr [1:2] "sampleNames" "sampleColumns" .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 1 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ featureData :Formal class 'AnnotatedDataFrame' [package "Biobase"] with 4 slots .. .. ..@ varMetadata :'data.frame': 0 obs. of 1 variable: .. .. .. ..$ labelDescription: chr(0) .. .. ..@ data :'data.frame': 12531 obs. of 0 variables .. .. ..@ dimLabels : chr [1:2] "featureNames" "featureColumns" .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 1 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ annotation : chr "hgu133plus2" ..@ protocolData :Formal class 'AnnotatedDataFrame' [package "Biobase"] with 4 slots .. .. ..@ varMetadata :'data.frame': 0 obs. of 1 variable: .. .. .. ..$ labelDescription: chr(0) .. .. ..@ data :'data.frame': 136 obs. of 0 variables .. .. ..@ dimLabels : chr [1:2] "sampleNames" "sampleColumns" .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 1 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. ..@ .Data:List of 4 .. .. .. ..$ : int [1:3] 2 15 0 .. .. .. ..$ : int [1:3] 2 16 0 .. .. .. ..$ : int [1:3] 1 3 0 .. .. .. ..$ : int [1:3] 1 0 0

Source

http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE42057

Examples

data(GSE42057)

Data Set Id: GSE7305

Description

For detailed description visit: http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE7305

Usage

data(GSE7305)

Format

The format is: Formal class 'ExpressionSet' [package "Biobase"] with 7 slots ..@ experimentData :Formal class 'MIAME' [package "Biobase"] with 13 slots .. .. ..@ name : chr "GSE7305" .. .. ..@ lab : chr "" .. .. ..@ contact : chr "" .. .. ..@ title : chr "" .. .. ..@ abstract : chr "" .. .. ..@ url : chr "http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE7305" .. .. ..@ pubMedIds : chr "" .. .. ..@ samples : list() .. .. ..@ hybridizations : list() .. .. ..@ normControls : list() .. .. ..@ preprocessing : list() .. .. ..@ other :List of 3 .. .. .. ..$ design : chr "Paired" .. .. .. ..$ targetGeneSets: chr "05213" .. .. .. ..$ disease : chr "Endometrial cancer" .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 2 .. .. .. .. .. ..$ : int [1:3] 1 0 0 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ assayData :<environment: 0x33e9dc0> ..@ phenoData :Formal class 'AnnotatedDataFrame' [package "Biobase"] with 4 slots .. .. ..@ varMetadata :'data.frame': 3 obs. of 1 variable: .. .. .. ..$ labelDescription: chr [1:3] NA NA NA .. .. ..@ data :'data.frame': 20 obs. of 3 variables: .. .. .. ..$ Sample: chr [1:20] "GSM175776" "GSM175777" "GSM175778" "GSM175779" ... .. .. .. ..$ Group : chr [1:20] "c" "c" "c" "c" ... .. .. .. ..$ Block : chr [1:20] "1" "2" "3" "4" ... .. .. ..@ dimLabels : chr [1:2] "sampleNames" "sampleColumns" .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 1 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ featureData :Formal class 'AnnotatedDataFrame' [package "Biobase"] with 4 slots .. .. ..@ varMetadata :'data.frame': 0 obs. of 1 variable: .. .. .. ..$ labelDescription: chr(0) .. .. ..@ data :'data.frame': 54675 obs. of 0 variables .. .. ..@ dimLabels : chr [1:2] "featureNames" "featureColumns" .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 1 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ annotation : chr "hgu133plus2" ..@ protocolData :Formal class 'AnnotatedDataFrame' [package "Biobase"] with 4 slots .. .. ..@ varMetadata :'data.frame': 0 obs. of 1 variable: .. .. .. ..$ labelDescription: chr(0) .. .. ..@ data :'data.frame': 20 obs. of 0 variables .. .. ..@ dimLabels : chr [1:2] "sampleNames" "sampleColumns" .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 1 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. ..@ .Data:List of 4 .. .. .. ..$ : int [1:3] 3 0 0 .. .. .. ..$ : int [1:3] 2 20 0 .. .. .. ..$ : int [1:3] 1 3 0 .. .. .. ..$ : int [1:3] 1 0 0

Source

http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE7305

Examples

data(GSE7305)