Package: LRDE
Type: Package
Title: Differential Expression Analysis with Long Read RNA-Seq Data
Version: 1.0.4
Authors@R: 
    c(
    person(given = "Ziyang", family = "Liu", email = "jacobleo773@gmail.com",
           role = c("aut", "cre"),
           comment = c(ORCID = "0009-0004-2098-434X")),
    person(given = "Hongxu", family = "Ding", email = "hongxuding@arizona.edu", role = c("aut", "fnd")),
    person(given = "Xiaoxiao", family = "Sun", email = "xiaosun@arizona.edu", role = c("aut", "fnd")),
    person(given = "Ziyuan", family = "Wang", email = "princezwang@arizona.edu", role = c("aut", "fnd"))
    )
Description: Provides hurdle negative binomial models for differential
        expression analysis with long-read RNA-Seq data.
Depends: R (>= 4.5.0)
Imports: stats, SummarizedExperiment
Suggests: BiocStyle, knitr, rmarkdown, BiocGenerics, testthat (>=
        3.0.0)
biocViews: Software, DifferentialExpression, Sequencing, RNASeq,
        LongRead, GeneExpression, Regression
URL: https://github.com/ziyang773/LRDE
BugReports: https://github.com/ziyang773/LRDE/issues
License: MIT + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
VignetteBuilder: knitr
Config/testthat/edition: 3
Config/pak/sysreqs: zlib1g-dev
Repository: Bioconductor 3.23
Date/Publication: 2026-09-25 03:42:36 UTC
RemoteUrl: https://github.com/bioc/LRDE
RemoteRef: RELEASE_3_23
RemoteSha: ee929aecf3356b1bbfc728bce50ebbcb06e85446
NeedsCompilation: no
Packaged: 2026-09-25 08:06:45 UTC; root
Author: Ziyang Liu [aut, cre] (ORCID: <https://orcid.org/0009-0004-2098-434X>),
  Hongxu Ding [aut, fnd],
  Xiaoxiao Sun [aut, fnd],
  Ziyuan Wang [aut, fnd]
Maintainer: Ziyang Liu <jacobleo773@gmail.com>