Package: MACSr 1.20.0

Qiang Hu

MACSr: MACS: Model-based Analysis for ChIP-Seq

The Model-based Analysis of ChIP-Seq (MACS) is a widely used toolkit for identifying transcript factor binding sites. This package is an R wrapper of the lastest MACS3.

Authors:Philippa Doherty [aut], Qiang Hu [aut, cre]

MACSr_1.20.0.tar.gz
MACSr_1.20.0.zip(r-4.7-any)MACSr_1.20.0.zip(r-4.6-any)MACSr_1.20.0.zip(r-4.5-any)
MACSr_1.20.0.tgz(r-4.6-any)MACSr_1.20.0.tgz(r-4.5-any)
MACSr_1.20.0.tar.gz(r-4.7-any)MACSr_1.20.0.tar.gz(r-4.6-any)
MACSr_1.20.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
MACSr/json (API)

# Install 'MACSr' in R:

install.packages('MACSr', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:MACSr-1.21.1(bioc 3.24)MACSr-1.20.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

software chipseq atacseq immunooncology

4.36 score 23 scripts 358 downloads 14 exports 66 dependencies

Last updated from:f9ff99b735 (on RELEASE_3_23). Checks:4 ERROR, 4 NOTE, 2 OK. Indexed: no.

Target	Result	Time
bioc-checks	ERROR	172
linux-devel-x86_64	NOTE	1242
source / vignettes	OK	1074
linux-release-x86_64	NOTE	1165
macos-release-arm64	NOTE	711
macos-oldrel-arm64	NOTE	629
windows-devel	ERROR	1470
windows-release	ERROR	1448
windows-oldrel	ERROR	1430
wasm-release	OK	167

Exports:bdgbroadcall bdgcmp bdgdiff bdgopt bdgpeakcall callpeak callvar cmbreps filterdup hmmratac pileup predictd randsample refinepeak

Dependencies:AnnotationDbi AnnotationHub askpass basilisk Biobase BiocBaseUtils BiocFileCache BiocGenerics BiocManager BiocVersion Biostrings bit bit64 blob cachem cli cpp11 crayon curl DBI dbplyr dir.expiry dplyr ExperimentHub fastmap filelock generics glue here httr httr2 IRanges jsonlite KEGGREST lattice lifecycle magrittr Matrix memoise mime openssl pillar pkgconfig png purrr R6 rappdirs Rcpp RcppTOML reticulate rlang rprojroot RSQLite S4Vectors Seqinfo stringi stringr sys tibble tidyr tidyselect utf8 vctrs withr XVector yaml

MACSr

Rendered fromMACSr.Rmdusingknitr::rmarkdown

Last update: 2023-11-20
Started: 2020-12-06

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
bdgbroadcall	bdgbroadcall
bdgcmp	bdgcmp
bdgdiff	bdgdiff
bdgopt	bdgopt
bdgpeakcall	bdgpeakcall
callpeak	callpeak
callvar	callvar
cmbreps	cmbreps
filterdup	filterdup
hmmratac	hmmratac
macsList	macsList-class
MACSr	MACSr-package MACSr
pileup	pileup
predictd	predictd
randsample	randsample
refinepeak	refinepeak