Introduction | The proboscis plot
Package: MAQCsubset 1.50.0
VJ Carey
MAQCsubset: Experimental Data Package: MAQCsubset
Data Package automatically created on Sun Nov 19 15:59:29 2006.
Authors:
MAQCsubset_1.50.0.tar.gz
MAQCsubset_1.50.0.tar.gz(r-4.7-any)MAQCsubset_1.50.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
MAQCsubset/json (API)
| # Install 'MAQCsubset' in R: |
| install.packages('MAQCsubset', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
- afxsub - Experimental Data Package: MAQCsubset
- afxsubRMA - Experimental Data Package: MAQCsubset
- afxsubRMAES - Experimental Data Package: MAQCsubset
- gehMAQCsubDef - Excerpt from GE Codelink array contributions to MAQC
- gehSubRaw - Excerpt from GE Codelink array contributions to MAQC
- gnfCerebHi - Gene lists for hi or low abundance in cerebellum according to Novartis GNF symatlas
- gnfCerebLow - Gene lists for hi or low abundance in cerebellum according to Novartis GNF symatlas
- ilmMAQCsubR - Experimental Data Package: MAQCsubset
On BioConductor:MAQCsubset-1.51.0(data/experiment 3.24)MAQCsubset-1.50.0(data/experiment 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
experimentdatamicroarraydatageodatapkg
Last updated from:5882baa484 (on RELEASE_3_23). Checks:1 ERROR, 2 WARNING, 1 OK. Indexed: no.
This is a data package. Data packages may be large and do not get checked across all platforms.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 273 | ||
| linux-devel | WARNING | 449 | ||
| source / vignettes | OK | 677 | ||
| linux-release | WARNING | 484 |
Exports:.requireCachedGenericslinesproboscis
Dependencies:abindaffyaffyioannotateAnnotationDbiaskpassbase64beanplotBHBiobaseBiocGenericsBiocIObiocmakeBiocManagerBiocParallelBiostringsbitbit64bitopsblobbumphuntercachemcigarilloclicliprcodetoolscpp11crayoncurldata.tableDBIDelayedArrayDelayedMatrixStatsdigestdir.expirydoRNGdplyrfarverfastmapFDb.InfiniumMethylation.hg19filelockforeachformatRfutile.loggerfutile.optionsgenefiltergenericsGenomeInfoDbGenomicAlignmentsGenomicFeaturesGenomicRangesGEOqueryggplot2gluegtableh5mreadHDF5Arrayhmshttrhttr2illuminaioIRangesisobanditeratorsjsonliteKEGGRESTKernSmoothlabelinglambda.rlatticelifecyclelimmalocfitlumimagrittrMASSMatrixMatrixGenericsmatrixStatsmclustmemoisemethylumimgcvmimeminfimulttestnleqslvnlmenor1mixopensslorg.Hs.eg.dbpillarpkgconfigplyrpngpreprocessCoreprettyunitsprogresspurrrquadprogR.methodsS3R.ooR.utilsR6RColorBrewerRcppRCurlreadrrentrezreshapereshape2restfulrrhdf5rhdf5filtersRhdf5libRhtslibrjsonrlangrngtoolsRsamtoolsRSQLitertracklayerrvestS4ArraysS4VectorsS7scalesscrimeselectrSeqinfosiggenessnowSparseArraysparseMatrixStatsstatmodstringistringrSummarizedExperimentsurvivalsystibbletidyrtidyselectTxDb.Hsapiens.UCSC.hg19.knownGenetzdbUCSC.utilsutf8vctrsviridisLitevroomwithrXMLxml2xtableXVectoryaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Excerpt from GE Codelink array contributions to MAQC | gehMAQCsubDef gehSubRaw |
| Gene lists for hi or low abundance in cerebellum according to Novartis GNF symatlas | gnfCerebHi gnfCerebLow |
| Experimental Data Package: MAQCsubset | afxsub afxsubRMA afxsubRMAES ilmMAQCsubR MAQCsubset |
| Produce a plot similar to Figure 2 of the Shippy MAQC paper (PMID 16964226). | proboscis |
| Class "proboStruct" | lines,proboStruct-method plot,proboStruct,ANY-method plot,proboStruct-method proboStruct-class show,proboStruct-method |
