Package: MEDIPSData 1.48.0
Lukas Chavez
MEDIPSData: Example data for MEDIPS and QSEA packages
Example data for MEDIPS and QSEA packages, consisting of chromosome 22 MeDIP and control/Input sample data. Additionally, the package contains MeDIP seq data from 3 NSCLC samples and adjacent normal tissue (chr 20-22). All data has been aligned to human genome hg19.
Authors:
MEDIPSData_1.48.0.tar.gz
MEDIPSData_1.48.0.tar.gz(r-4.7-any)MEDIPSData_1.48.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
MEDIPSData/json (API)
| # Install 'MEDIPSData' in R: |
| install.packages('MEDIPSData', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org')) |
- CS - COUPLING SET
- DE_Input - Control data set from definitive endoderm
- DE_MeDIP - Concatenated set of three MeDIP-seq data sets (replicates) from definitive endoderm
- hESCs_Input - Control data set from human embryonic stem cells
- hESCs_MeDIP - Concatenated set of three MeDIP-seq data sets (replicates) from human embryonic stem cells
- mart_gene - An annotation object generated by accessing biomaRt using the MEDIPS.getAnnotation function of the MEDIPS package.
- resultTable - A result table as returnced by the MEDIPS.meth function of the MEDIPS package
- tcga_luad_lusc_450kmeth - Lung cancer calibration data
On BioConductor:MEDIPSData-1.49.0(data/experiment 3.24)MEDIPSData-1.48.0(data/experiment 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
experimentdatagenomesequencingdatadatapkg
Last updated from:2c0e134e10 (on RELEASE_3_23). Checks:1 ERROR, 2 WARNING, 1 OK. Indexed: no.
This is a data package. Data packages may be large and do not get checked across all platforms.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 141 | ||
| linux-devel | WARNING | 223 | ||
| source / vignettes | OK | 336 | ||
| linux-release | WARNING | 220 |
Exports:
Dependencies:
