Package: MLP 1.60.0

Tobias Verbeke

MLP: Mean Log P Analysis

Pathway analysis based on p-values associated to genes from a genes expression analysis of interest. Utility functions enable to extract pathways from the Gene Ontology Biological Process (GOBP), Molecular Function (GOMF) and Cellular Component (GOCC), Kyoto Encyclopedia of Genes of Genomes (KEGG) and Reactome databases. Methodology, and helper functions to display the results as a table, barplot of pathway significance, Gene Ontology graph and pathway significance are available.

Authors:Nandini Raghavan [aut], Tobias Verbeke [aut], An De Bondt [aut], Javier Cabrera [ctb], Dhammika Amaratunga [ctb], Tine Casneuf [ctb], Willem Ligtenberg [ctb], Laure Cougnaud [cre], Katarzyna Gorczak [ctb]

MLP_1.60.0.tar.gz
MLP_1.60.0.zip(r-4.7)MLP_1.60.0.zip(r-4.6)MLP_1.60.0.zip(r-4.5)
MLP_1.60.0.tgz(r-4.6-any)MLP_1.60.0.tgz(r-4.5-any)
MLP_1.60.0.tar.gz(r-4.7-any)MLP_1.60.0.tar.gz(r-4.6-any)
MLP_1.60.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
MLP/json (API)
NEWS

# Install 'MLP' in R:
install.packages('MLP', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:MLP-1.61.0(bioc 3.24)MLP-1.60.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

geneticsgeneexpressionpathwaysreactomekegggo

4.78 score 1 packages 8 scripts 510 downloads 37 mentions 6 exports 40 dependencies

Last updated from:7475a93082 (on RELEASE_3_23). Checks:3 ERROR, 7 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksERROR274
linux-devel-x86_64OK855
source / vignettesOK394
linux-release-x86_64OK852
macos-release-arm64ERROR549
macos-oldrel-arm64ERROR571
windows-develOK753
windows-releaseOK785
windows-oldrelOK863
wasm-releaseOK276

Exports:addGeneSetDescriptiongetGeneSetsMLPmlpBarplotplotGeneSetSignificanceplotGOgraph

Dependencies:AnnotationDbiaskpassBiobaseBiocGenericsBiostringsbitbit64bitopsblobcachemcaToolsclicpp11crayoncurlDBIfastmapgenericsgluegplotsgtoolshttrIRangesjsonliteKEGGRESTKernSmoothlifecyclememoisemimeopensslpkgconfigpngR6rlangRSQLiteS4VectorsSeqinfosysvctrsXVector

UsingMLP

Rendered fromUsingMLP.Rnwusingutils::Sweaveon May 29 2026.

Last update: 2021-11-19
Started: 2013-11-01