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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "MSnID" in publications use:'
type: software
license: Artistic-2.0
title: 'MSnID: Utilities for Exploration and Assessment of Confidence of LC-MSn Proteomics
  Identifications'
version: 1.46.0
doi: 10.32614/CRAN.package.MSnID
abstract: Extracts MS/MS ID data from mzIdentML (leveraging mzID package) or text
  files. After collating the search results from multiple datasets it assesses their
  identification quality and optimize filtering criteria to achieve the maximum number
  of identifications while not exceeding a specified false discovery rate. Also contains
  a number of utilities to explore the MS/MS results and assess missed and irregular
  enzymatic cleavages, mass measurement accuracy, etc.
authors:
- family-names: Petyuk
  given-names: Vlad
  email: petyuk@gmail.com
- family-names: Gatto
  given-names: Vlad Petyuk with contributions from Laurent
repository: https://bioc-release.r-universe.dev
commit: b92ae22af69abaa2679e4b7e5b9f4dc7fab78ce3
date-released: '2026-04-28'
contact:
- family-names: Petyuk
  given-names: Vlad
  email: petyuk@gmail.com