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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "MSstatsShiny" in publications use:'
type: software
license: Artistic-2.0
title: 'MSstatsShiny: MSstats GUI for Statistical Anaylsis of Proteomics Experiments'
version: 1.14.0
doi: 10.32614/CRAN.package.MSstatsShiny
abstract: MSstatsShiny is an R-Shiny graphical user interface (GUI) integrated with
  the R packages MSstats, MSstatsTMT, and MSstatsPTM. It provides a point and click
  end-to-end analysis pipeline applicable to a wide variety of experimental designs.
  These include data-dependedent acquisitions (DDA) which are label-free or tandem
  mass tag (TMT)-based, as well as DIA, SRM, and PRM acquisitions and those targeting
  post-translational modifications (PTMs). The application automatically saves users
  selections and builds an R script that recreates their analysis, supporting reproducible
  data analysis.
authors:
- family-names: Kohler
  given-names: Devon
  email: kohler.d@northeastern.edu
- family-names: Wu
  given-names: Anthony
  email: wu.anthon@northeastern.edu
- family-names: Raju
  given-names: Deril
  email: raju.d@northeastern.edu
- family-names: Kaza
  given-names: Maanasa
  email: maanasakaza@gmail.com
- family-names: Pasi
  given-names: Cristina
  email: cristinapasi@gmail.com
- family-names: Huang
  given-names: Ting
  email: thuang0703@gmail.com
- family-names: Staniak
  given-names: Mateusz
  email: mateusz.staniak@math.uni.wroc.pl
- family-names: Mohandas
  given-names: Dhaval
  email: dhavalmohandas@gmail.com
- family-names: Sabido
  given-names: Eduard
  email: eduard.sabido@crg.cat
- family-names: Choi
  given-names: Meena
  email: choi.meena@gene.com
- family-names: Vitek
  given-names: Olga
  email: o.vitek@northeastern.edu
repository: https://bioc-release.r-universe.dev
repository-code: https://github.com/Vitek-Lab/MSstatsShiny
commit: e1e0767e4ccf7c51a10d4e437a5a8ac60e5f05c5
url: https://github.com/Vitek-Lab/MSstatsShiny
date-released: '2026-04-28'
contact:
- family-names: Wu
  given-names: Anthony
  email: wu.anthon@northeastern.edu