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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "MSstatsTMT" in publications use:'
type: software
license: Artistic-2.0
title: 'MSstatsTMT: Protein Significance Analysis in shotgun mass spectrometry-based
  proteomic experiments with tandem mass tag (TMT) labeling'
version: 2.20.0
identifiers:
- type: doi
  value: 10.32614/CRAN.package.MSstatsTMT
- type: url
  value: http://msstats.org/msstatstmt/
abstract: The package provides statistical tools for detecting differentially abundant
  proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass
  tag (TMT) labeling. It provides multiple functionalities, including aata visualization,
  protein quantification and normalization, and statistical modeling and inference.
  Furthermore, it is inter-operable with other data processing tools, such as Proteome
  Discoverer, MaxQuant, OpenMS and SpectroMine.
authors:
- family-names: Kohler
  given-names: Devon
  email: kohler.d@northeastern.edu
- family-names: Huang
  given-names: Ting
  email: thuang0703@gmail.com
- family-names: Choi
  given-names: Meena
  email: mnchoi67@gmail.com
- family-names: Staniak
  given-names: Mateusz
  email: mtst@mstaniak.pl
- family-names: Wu
  given-names: Tony
  email: wu.anthon@northeastern.edu
- family-names: Raju
  given-names: Deril
  email: raju.d@northeastern.edu
- family-names: Hao
  given-names: Sicheng
  email: hao.sic@husky.neu.edu
- family-names: Vitek
  given-names: Olga
  email: o.vitek@northeastern.edu
preferred-citation:
  type: article
  title: 'MSstatsTMT: Statistical detection of differentially abundant proteins in
    experiments with isobaric labeling and multiple mixtures'
  authors:
  - family-names: Huang
    given-names: Ting
    email: thuang0703@gmail.com
  - family-names: Choi
    given-names: Meena
    email: mnchoi67@gmail.com
  - family-names: Tzouros
    given-names: Manuel
  - family-names: Golling
    given-names: Sabrina
  - family-names: Pandya
    given-names: Nikhil Janak
  - family-names: Banfai
    given-names: Balazs
  - family-names: Dunkley
    given-names: Tom
  - family-names: Vitek
    given-names: Olga
    email: o.vitek@northeastern.edu
  journal: Molecular & Cellular Proteomics
  volume: '19'
  issue: '10'
  year: '2020'
  start: 1706-1723
repository: https://bioc-release.r-universe.dev
commit: e9a43e3d7b0eed5c6d70010c39eb6fe2b0de64ba
url: https://groups.google.com/forum/#!forum/msstats
date-released: '2025-03-05'
contact:
- family-names: Kohler
  given-names: Devon
  email: kohler.d@northeastern.edu