Package: Macarron 1.16.0

Sagun Maharjan

Macarron: Prioritization of potentially bioactive metabolic features from epidemiological and environmental metabolomics datasets

Macarron is a workflow for the prioritization of potentially bioactive metabolites from metabolomics experiments. Prioritization integrates strengths of evidences of bioactivity such as covariation with a known metabolite, abundance relative to a known metabolite and association with an environmental or phenotypic indicator of bioactivity. Broadly, the workflow consists of stratified clustering of metabolic spectral features which co-vary in abundance in a condition, transfer of functional annotations, estimation of relative abundance and differential abundance analysis to identify associations between features and phenotype/condition.

Authors:Amrisha Bhosle [aut], Ludwig Geistlinger [aut], Sagun Maharjan [aut, cre]

Macarron_1.16.0.tar.gz
Macarron_1.16.0.zip(r-4.7)Macarron_1.16.0.zip(r-4.6)Macarron_1.16.0.zip(r-4.5)
Macarron_1.16.0.tgz(r-4.6-any)Macarron_1.16.0.tgz(r-4.5-any)
Macarron_1.16.0.tar.gz(r-4.7-any)Macarron_1.16.0.tar.gz(r-4.6-any)
Macarron_1.16.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
Macarron/json (API)
NEWS

# Install 'Macarron' in R:
install.packages('Macarron', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:

On BioConductor:Macarron-1.17.0(bioc 3.24)Macarron-1.16.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

sequencingmetabolomicscoveragefunctionalpredictionclustering

4.57 score 15 scripts 302 downloads 10 exports 179 dependencies

Last updated from:b315062408 (on RELEASE_3_23). Checks:1 WARNING, 7 NOTE, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksWARNING225
linux-devel-x86_64NOTE852
source / vignettesOK539
linux-release-x86_64NOTE856
macos-release-arm64NOTE633
macos-oldrel-arm64NOTE584
windows-develNOTE865
windows-releaseNOTE846
windows-oldrelNOTE948
wasm-releaseOK231

Exports:calAVAcalEScalQvaldecorateIDfindMacModMacarronmakeDisMatprepInputprioritizeshowBest

Dependencies:abindbackportsbase64encBHbiglmBiobaseBiocGenericsBiocParallelbitbitopsbootbroombslibcachemcarcarDatacaToolscheckmatechemometricsclasscliclustercodacodetoolscolorspacecowplotcplmcpp11data.tableDBIDelayedArrayDEoptimRDerivdigestdoBydoParalleldplyrdynamicTreeCute1071edgeRevaluatefarverfastclusterfastmapfffontawesomeforeachforecastforeignformatRFormulafracdifffsfutile.loggerfutile.optionsgenericsGenomicRangesggplot2glmmTMBglmnetglueGPArotationgplotsgridExtragtablegtoolshashhighrHmischtmlTablehtmltoolshtmlwidgetsimputeIRangesisobanditeratorsjquerylibjsonliteKernSmoothknitrlabelinglambda.rlarslatticelifecyclelimmalme4lmerTestlmtestlocfitloggingMaaslin2magrittrMASSMatrixMatrixGenericsMatrixModelsmatrixStatsmclustmemoisemetagenomeSeqmgcvmicrobenchmarkmimeminqamnormtmodelrmvtnormnlmenloptrnnetnumDerivoptparsepbapplypbkrtestpcaPPpermutepheatmappillarpkgconfigplsplyrpreprocessCoreproxypsclpsychpurrrquantregR6rappdirsrbibutilsRColorBrewerRcppRcppArmadilloRcppEigenRdpackreformulasreshape2rlangrmarkdownrobustbaserpartrstudioapiS4ArraysS4VectorsS7sandwichsassscalesSeqinfoshapesnowsomSparseArraySparseMstatmodstringistringrSummarizedExperimentsurvivaltibbletidyrtidyselecttimeDatetinytexTMBtweedieurcautf8vctrsveganviridisLiteWGCNAwithrWrenchxfunXVectoryamlzoo

Macarron User Manual

Amrisha Bhosle, Ludwig Geistlinger, Sagun Maharjan

Rendered fromMacarron.Rmdusingknitr::rmarkdownon May 31 2026.

Last update: 2026-04-02
Started: 2023-11-27