Package: MassArray
Type: Package
Title: Analytical Tools for MassArray Data
Version: 1.64.0
Date: 2019-03-18
Author: Reid F. Thompson <reid.thompson@gmail.com>, John M. Greally
        <john.greally@einstein.yu.edu>
Maintainer: Reid F. Thompson <reid.thompson@gmail.com>
Imports: graphics, grDevices, stats, utils
Depends: R (>= 2.10.0), methods
Description: This package is designed for the import, quality control,
        analysis, and visualization of methylation data generated using
        Sequenom's MassArray platform.  The tools herein contain a
        highly detailed amplicon prediction for optimal assay design.
        Also included are quality control measures of data, such as
        primer dimer and bisulfite conversion efficiency estimation.
        Methylation data are calculated using the same algorithms
        contained in the EpiTyper software package.  Additionally,
        automatic SNP-detection can be used to flag potentially
        confounded data from specific CG sites.  Visualization includes
        barplots of methylation data as well as UCSC Genome
        Browser-compatible BED tracks.  Multiple assays can be
        positionally combined for integrated analysis.
License: GPL (>=2)
biocViews: ImmunoOncology, DNAMethylation, SNP, MassSpectrometry,
        Genetics, DataImport, Visualization
LazyData: yes
LazyLoad: yes
Repository: Bioconductor 3.23
Date/Publication: 2026-04-28 12:34:27 UTC
RemoteUrl: https://github.com/bioc/MassArray
RemoteRef: RELEASE_3_23
RemoteSha: e7892e8ea9ca636eb3e139fe0acfbbce14a2b3c5
NeedsCompilation: no
Packaged: 2026-11-07 12:34:32 UTC; root