Package: MassSpecWavelet 1.78.0

Sergio Oller Moreno

MassSpecWavelet: Peak Detection for Mass Spectrometry data using wavelet-based algorithms

Peak Detection in Mass Spectrometry data is one of the important preprocessing steps. The performance of peak detection affects subsequent processes, including protein identification, profile alignment and biomarker identification. Using Continuous Wavelet Transform (CWT), this package provides a reliable algorithm for peak detection that does not require any type of smoothing or previous baseline correction method, providing more consistent results for different spectra. See <doi:10.1093/bioinformatics/btl355} for further details.

Authors:Pan Du [aut], Warren Kibbe [aut], Simon Lin [aut], Sergio Oller Moreno [aut, cre]

MassSpecWavelet_1.78.0.tar.gz
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manual.pdf |manual.html✨
card.svg |card.png
MassSpecWavelet/json (API)
NEWS

# Install 'MassSpecWavelet' in R:
install.packages('MassSpecWavelet', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/zeehio/massspecwavelet/issues

Datasets:

On BioConductor:MassSpecWavelet-1.79.0(bioc 3.24)MassSpecWavelet-1.78.0(bioc 3.23)

immunooncologymassspectrometryproteomicspeakdetection

9.53 score 11 stars 20 packages 47 scripts 3.9k downloads 19 mentions 13 exports 0 dependencies

Last updated from:e6929577cd (on RELEASE_3_23). Checks:1 WARNING, 13 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksWARNING148
linux-devel-arm64OK138
linux-devel-x86_64OK147
source / vignettesOK192
linux-release-arm64OK133
linux-release-x86_64OK138
macos-release-arm64OK94
macos-release-x86_64OK177
macos-oldrel-arm64OK92
macos-oldrel-x86_64OK214
windows-develOK96
windows-releaseOK98
windows-oldrelOK119
wasm-releaseOK93

Exports:cwtgetLocalMaximumCWTgetRidgegetRidgeLengthidentifyMajorPeakslocalMaximummexhpeakDetectionCWTplotLocalMaxplotPeakplotRidgeListprepareWaveletstuneInPeakInfo

Dependencies:

Finding local maxima with MassSpecWavelet

Sergio Oller

Rendered fromFindingLocalMaxima.Rmdusingknitr::rmarkdownon May 29 2026.

Last update: 2022-10-10
Started: 2022-10-06

Using the MassSpecWavelet package

Pan Du, Warren A. Kibbe, Simon Lin

Rendered fromMassSpecWavelet.Rmdusingknitr::rmarkdownon May 29 2026.

Last update: 2023-01-30
Started: 2022-04-04