Package: MerfishData
Title: Collection of public MERFISH datasets
Version: 1.14.1
Authors@R: 
    c(person("Ludwig", "Geistlinger", 
             role = c("aut", "cre"),
             email = "ludwig_geistlinger@hms.harvard.edu", 
             comment = c(ORCID = "0000-0002-2495-5464")),
      person("Tyrone", "Lee", role = "ctb"),
      person("Helena", "Crowell", role = "ctb",
             comment = c(ORCID = "0000-0002-4801-1767")), 
      person("Daniela", "Corbetta", role = "ctb"), 
      person("Jeffrey", "Moffitt", role = "aut"),
      person("Robert", "Gentleman", role = "aut"))
Description: MerfishData is an ExperimentHub package that serves
        publicly available datasets obtained with Multiplexed
        Error-Robust Fluorescence in situ Hybridization (MERFISH).
        MERFISH is a massively multiplexed single-molecule imaging
        technology capable of simultaneously measuring the copy number
        and spatial distribution of hundreds to tens of thousands of
        RNA species in individual cells. The scope of the package is to
        provide MERFISH data for benchmarking and analysis.
License: Artistic-2.0
VignetteBuilder: knitr
URL: https://github.com/ccb-hms/MerfishData
BugReports: https://github.com/ccb-hms/MerfishData/issues
Depends: R (>= 4.2.0), EBImage, SpatialExperiment
Imports: grDevices, AnnotationHub, BumpyMatrix, ExperimentHub,
        S4Vectors, SingleCellExperiment, SummarizedExperiment,
        HDF5Array
Suggests: grid, ggplot2, ggpubr, knitr, rmarkdown, scater, scattermore,
        terra, testthat, BiocStyle, DropletUtils
biocViews: ExperimentHub, ExpressionData, HighThroughputImagingData,
        Mus_musculus_Data, SingleCellData, SpatialData
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
Config/pak/sysreqs: cmake libfftw3-dev make libmagick++-dev gsfonts
        libicu-dev libjpeg-dev libpng-dev libtiff-dev libuv1-dev
        libssl-dev zlib1g-dev
Repository: Bioconductor 3.23
Date/Publication: 2026-05-01 14:08:01 UTC
RemoteUrl: https://github.com/bioc/MerfishData
RemoteRef: RELEASE_3_23
RemoteSha: 83004660393471d9c595762f777c9c9bdf812822
NeedsCompilation: no
Packaged: 2026-10-10 11:18:17 UTC; root
Author: Ludwig Geistlinger [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-2495-5464>),
  Tyrone Lee [ctb],
  Helena Crowell [ctb] (ORCID: <https://orcid.org/0000-0002-4801-1767>),
  Daniela Corbetta [ctb],
  Jeffrey Moffitt [aut],
  Robert Gentleman [aut]
Maintainer: Ludwig Geistlinger <ludwig_geistlinger@hms.harvard.edu>