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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "MethylAid" in publications use:'
type: software
license: GPL-2.0-or-later
title: 'MethylAid: Visual and interactive quality control of large Illumina DNA Methylation
  array data sets'
version: 1.46.0
identifiers:
- type: doi
  value: 10.32614/CRAN.package.MethylAid
abstract: A visual and interactive web application using RStudio's shiny package.
  Bad quality samples are detected using sample-dependent and sample-independent controls
  present on the array and user adjustable thresholds. In depth exploration of bad
  quality samples can be performed using several interactive diagnostic plots of the
  quality control probes present on the array. Furthermore, the impact of any batch
  effect provided by the user can be explored.
authors:
- family-names: Iterson
  given-names: Maarten
  name-particle: van
  email: mviterson@gmail.com
preferred-citation:
  type: article
  title: 'MethylAid: Visual and interactive quality control of large Illumina 450k
    data sets'
  authors:
  - family-names: Iterson
    given-names: Maarten
    name-particle: van
    email: mviterson@gmail.com
  - family-names: Tobi
    given-names: Elmar W.
  - family-names: Slieker
    given-names: Roderick C.
  - family-names: Hollander
    given-names: Wouter
    name-particle: den
  - family-names: Luijk
    given-names: Ren\`e
  - family-names: Slagboom
    given-names: P. Eline
  - family-names: Heijmans
    given-names: Bastiaan T.
  year: '2014'
  journal: Bioinformatics
  volume: '30'
  issue: '23'
  url: http://bioinformatics.oxfordjournals.org/content/30/23/3435
repository: https://bioc-release.r-universe.dev
commit: 88fe7cf6569dacd4562e453e3fe665ef0c14a34a
date-released: '2019-10-07'
contact:
- family-names: Iterson
  given-names: Maarten
  name-particle: van
  email: mviterson@gmail.com