Package: MotifDb 1.54.0
Paul Shannon
MotifDb: An Annotated Collection of Protein-DNA Binding Sequence Motifs
More than 9900 annotated position frequency matrices from 14 public sources, for multiple organisms.
Authors:
MotifDb_1.54.0.tar.gz
MotifDb_1.54.0.zip(r-4.7)MotifDb_1.54.0.zip(r-4.6)MotifDb_1.54.0.zip(r-4.5)
MotifDb_1.54.0.tgz(r-4.6-any)MotifDb_1.54.0.tgz(r-4.5-any)
MotifDb_1.54.0.tar.gz(r-4.7-any)MotifDb_1.54.0.tar.gz(r-4.6-any)
MotifDb_1.54.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
MotifDb/json (API)
NEWS
| # Install 'MotifDb' in R: |
| install.packages('MotifDb', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:MotifDb-1.55.0(bioc 3.24)MotifDb-1.54.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:27fbfe3fa3 (on RELEASE_3_23). Checks:1 ERROR, 7 WARNING, 2 OK. Indexed: no.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 206 | ||
| linux-devel-x86_64 | WARNING | 441 | ||
| source / vignettes | OK | 238 | ||
| linux-release-x86_64 | WARNING | 507 | ||
| macos-release-arm64 | WARNING | 240 | ||
| macos-oldrel-arm64 | WARNING | 278 | ||
| windows-devel | WARNING | 378 | ||
| windows-release | WARNING | 354 | ||
| windows-oldrel | WARNING | 341 | ||
| wasm-release | OK | 144 |
Exports:associateTranscriptionFactorsexportgeneToMotifMotifDbmotifToGenequeryshowsubset
Dependencies:abindaskpassBHBiobaseBiocGenericsBiocIOBiocParallelBiostringsbitopscigarillocodetoolscpp11crayoncurldata.tableDelayedArrayformatRfutile.loggerfutile.optionsgenericsGenomicAlignmentsGenomicRangeshttrIRangesjsonlitelambda.rlatticeMatrixMatrixGenericsmatrixStatsmimeopensslR6RCurlrestfulrRhtslibrjsonRsamtoolsrtracklayerS4ArraysS4VectorsSeqinfosnowSparseArraysplitstackshapeSummarizedExperimentsysXMLXVectoryaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| associateTranscriptionFactors | associateTranscriptionFactors associateTranscriptionFactors,MotifList-method |
| export | export export,MotifList,character,character-method export,MotifList,connection,character-method export,MotifList,missing,character-method |
| geneToMotif | geneToMotif geneToMotif,MotifList-method |
| MotifDb: An Annotated Collection of DNA-binding sequence motifs | MotifDb-package MotifDb |
| MotifList | class:MotifList MotifList-class show,MotifList-method |
| motifToGene | motifToGene motifToGene,MotifList-method |
| query | query query,MotifList-method |
| subset | subset,MotifList-method |
