# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "MotifPeeker" in publications use:'
type: software
license: GPL-3.0-or-later
title: 'MotifPeeker: Benchmarking Epigenomic Profiling Methods Using Motif Enrichment'
version: 1.4.0
doi: 10.1093/bioadv/vbag023
identifiers:
- type: doi
  value: 10.32614/CRAN.package.MotifPeeker
abstract: 'MotifPeeker is used to compare and analyse datasets from epigenomic profiling
  methods with motif enrichment as the key benchmark. The package outputs an HTML
  report consisting of three sections: (1. General Metrics) Overview of peaks-related
  general metrics for the datasets (FRiP scores, peak widths and motif-summit distances).
  (2. Known Motif Enrichment Analysis) Statistics for the frequency of user-provided
  motifs enriched in the datasets. (3. Motif Discovery Enrichment Analysis) Statistics
  for the frequency of ab-initio discovered motifs enriched in the datasets and compared
  with known motifs.'
authors:
- family-names: Dash
  given-names: Hiranyamaya
  email: hdash.work@gmail.com
  orcid: https://orcid.org/0009-0005-5514-505X
- family-names: Roberts
  given-names: Thomas
  email: tomroberts.work15@gmail.com
  orcid: https://orcid.org/0009-0006-6244-8670
- family-names: Weinert
  given-names: Maria
  email: m.weinert13@imperial.ac.uk
  orcid: https://orcid.org/0000-0001-6187-1000
- family-names: Skene
  given-names: Nathan
  email: nathan.skene@gmail.com
  orcid: https://orcid.org/0000-0002-6807-3180
preferred-citation:
  type: article
  title: 'MotifPeeker: Benchmarking epigenomic profiling methods using motifs'
  authors:
  - family-names: Dash
    given-names: Hiranyamaya
    email: hdash.work@gmail.com
    orcid: https://orcid.org/0009-0005-5514-505X
  - family-names: Roberts
    given-names: Thomas
    email: tomroberts.work15@gmail.com
    orcid: https://orcid.org/0009-0006-6244-8670
  - family-names: Weinert
    given-names: Maria
    email: m.weinert13@imperial.ac.uk
    orcid: https://orcid.org/0000-0001-6187-1000
  - family-names: Skene
    given-names: Nathan
    email: nathan.skene@gmail.com
    orcid: https://orcid.org/0000-0002-6807-3180
  journal: Bioinformatics Advances
  year: '2026'
  month: '2'
  issn: 2635-0041
  doi: 10.1093/bioadv/vbag023
  url: https://doi.org/10.1093/bioadv/vbag023
repository: https://bioc-release.r-universe.dev
repository-code: https://github.com/neurogenomics/MotifPeeker
commit: 35008efabbb45ec670aad0293ceae31b25e8851a
url: https://github.com/neurogenomics/MotifPeeker
date-released: '2026-04-28'
contact:
- family-names: Dash
  given-names: Hiranyamaya
  email: hdash.work@gmail.com
  orcid: https://orcid.org/0009-0005-5514-505X