Package: MouseFM 1.22.0

Matthias Munz

MouseFM: In-silico methods for genetic finemapping in inbred mice

This package provides methods for genetic finemapping in inbred mice by taking advantage of their very high homozygosity rate (>95%).

Authors:Matthias Munz [aut, cre], Inken Wohlers [aut], Hauke Busch [aut]

MouseFM_1.22.0.tar.gz
MouseFM_1.22.0.zip(r-4.7)MouseFM_1.22.0.zip(r-4.6)MouseFM_1.22.0.zip(r-4.5)
MouseFM_1.22.0.tgz(r-4.6-any)MouseFM_1.22.0.tgz(r-4.5-any)
MouseFM_1.22.0.tar.gz(r-4.7-any)MouseFM_1.22.0.tar.gz(r-4.6-any)
MouseFM_1.22.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
MouseFM/json (API)
NEWS

# Install 'MouseFM' in R:
install.packages('MouseFM', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/matmu/mousefm/issues

On BioConductor:MouseFM-1.23.0(bioc 3.24)MouseFM-1.22.0(bioc 3.23)

geneticssnpgenetargetvariantannotationgenomicvariationmultiplecomparisonsystemsbiologymathematicalbiologypatternlogicgenepredictionbiomedicalinformaticsfunctionalgenomicsfinemapgene-candidatesinbred-miceinbred-strainsmouseqtlqtl-mapping

5.56 score 15 scripts 312 downloads 1 mentions 15 exports 74 dependencies

Last updated from:ebfdc44129 (on RELEASE_3_23). Checks:8 NOTE, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksNOTE177
linux-devel-x86_64NOTE384
source / vignettesOK260
linux-release-x86_64NOTE320
macos-release-arm64NOTE207
macos-oldrel-arm64NOTE191
windows-develNOTE251
windows-releaseNOTE214
windows-oldrelNOTE251
wasm-releaseOK125

Exports:annotate_consequencesannotate_mouse_genesavail_chromosomesavail_consequencesavail_strainsdf2GRangesfetchfinemapget_topgetURLGRanges2dfprioref_genomesetURLvis_reduction_factors

Dependencies:AnnotationDbiaskpassBiobaseBiocFileCacheBiocGenericsbiomaRtBiostringsbitbit64blobcachemclicpp11crayoncurldata.tableDBIdbplyrdplyrfarverfastmapfilelockgenericsGenomicRangesggplot2gluegtablegtoolshmshttrhttr2IRangesisobandjsonliteKEGGRESTlabelinglifecyclemagrittrmemoisemimeopensslpillarpkgconfigplyrpngprettyunitsprogresspurrrR6rappdirsRColorBrewerRcppreshape2rlangrlistRSQLiteS4VectorsS7scalesSeqinfostringistringrsystibbletidyrtidyselectutf8vctrsviridisLitewithrXMLxml2XVectoryaml

Fetch homozygous genotypes of inbred mouse strains

Matthias Munz

Rendered fromfetch.Rmdusingknitr::rmarkdownon May 29 2026.

Last update: 2020-06-08
Started: 2020-05-18

Finemapping of genetic regions in inbred mice

Matthias Munz

Rendered fromfinemap.Rmdusingknitr::rmarkdownon May 29 2026.

Last update: 2020-06-08
Started: 2020-05-18

Prioritization of inbred mouse strains for resolving genetic regions

Matthias Munz

Rendered fromprio.Rmdusingknitr::rmarkdownon May 29 2026.

Last update: 2020-06-08
Started: 2020-05-18